Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS28Q9UK41 PTGES3P3-201ENST00000511479 482 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 HIGD1AP3-201ENST00000515857 278 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC008694.2-201ENST00000517591 306 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 ARL2BPP5-201ENST00000523141 481 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 OR5BC1P-201ENST00000529327 739 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC093519.1-201ENST00000566109 298 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 RNA5SP108-201ENST00000605921 117 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 AL445423.1-201ENST00000609941 536 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC123767.1-202ENST00000620407 817 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AL157770.1-201ENST00000623049 439 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC098679.5-201ENST00000624394 571 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 MFSD8-245ENST00000641743 948 ntBASIC4.53□□□□□ -1.68
VPS28Q9UK41 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VPS28Q9UK41 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
VPS28Q9UK41 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.53□□□□□ -1.68
VPS28Q9UK41 AC005261.4-201ENST00000600047 1385 ntBASIC4.53□□□□□ -1.69
VPS28Q9UK41 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 OR10J6P-201ENST00000289731 930 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 RNU6-707P-201ENST00000364647 95 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 RNU6-1226P-201ENST00000384317 107 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 MIR217-201ENST00000384817 110 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 MIR649-201ENST00000384843 97 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 MIR3065-201ENST00000390137 79 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 ZNF602P-201ENST00000405929 924 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 NIPA2P1-201ENST00000426223 976 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 MTCO1P3-201ENST00000429327 192 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC092393.1-201ENST00000439625 742 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 RPL23AP33-201ENST00000442301 452 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 HMGB1P16-201ENST00000447155 540 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 VN1R32P-201ENST00000452234 905 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC026979.1-201ENST00000492525 396 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 PPBPP1-201ENST00000510807 373 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC083899.3-201ENST00000603413 594 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 PART1_2.1-201ENST00000612397 250 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC068722.2-201ENST00000618734 544 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC011944.2-201ENST00000624440 683 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VPS28Q9UK41 MTCO1P24-201ENST00000515438 1558 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 AC027290.2-201ENST00000623210 18662 ntBASIC4.52□□□□□ -1.69
VPS28Q9UK41 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VPS28Q9UK41 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS28Q9UK41 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS28Q9UK41 DCAF13P1-201ENST00000495256 1330 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS28Q9UK41 MIR331-201ENST00000362302 94 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 RNA5SP52-201ENST00000362448 134 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 RNU4-51P-201ENST00000364206 140 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS28Q9UK41 AL133264.1-201ENST00000407157 562 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 RAB28P1-201ENST00000411517 641 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC011933.1-201ENST00000413334 321 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 FCF1P2-201ENST00000415284 583 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AL449283.1-202ENST00000418249 604 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.51□□□□□ -1.69
VPS28Q9UK41 AC013410.2-201ENST00000422627 201 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms