Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 RNA5SP326-201ENST00000363209 110 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 Y_RNA.216-201ENST00000364205 93 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 RN7SKP6-201ENST00000364795 319 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 MIR130A-201ENST00000385274 89 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 ARF4P3-201ENST00000397387 509 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 LINC00354-201ENST00000412119 347 ntTSL 5 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 MTND3P8-201ENST00000412909 339 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC006335.2-201ENST00000437993 330 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 BNIP3P2-201ENST00000441221 577 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 GAPDHP14-201ENST00000450472 937 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 HMGB1P4-201ENST00000455362 567 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 RPS23P2-201ENST00000463671 415 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC233702.1-201ENST00000482905 502 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 RN7SL267P-201ENST00000485107 261 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 Y_RNA.691-201ENST00000516611 103 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 RNA5SP75-201ENST00000516841 111 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC107934.1-201ENST00000522215 217 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC022616.3-201ENST00000523940 148 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 SUB1P1-201ENST00000524415 382 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC087241.2-201ENST00000535801 324 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC027796.1-201ENST00000575593 512 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 MIR3171-201ENST00000584270 74 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 OR10AB1P-201ENST00000609613 938 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AL021918.2-201ENST00000613415 194 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AL512652.1-201ENST00000619006 500 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC134503.1-201ENST00000633048 54 ntBASIC5.7□□□□□ -1.5
SSU72Q9NP77 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.7□□□□□ -1.5
SSU72Q9NP77 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SSU72Q9NP77 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SSU72Q9NP77 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SSU72Q9NP77 RIOK3P1-201ENST00000418778 1528 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 MTND4P27-201ENST00000450813 1354 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SSU72Q9NP77 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SSU72Q9NP77 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SSU72Q9NP77 RNU6-474P-201ENST00000384243 107 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 MIR27A-201ENST00000385073 78 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SSU72Q9NP77 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SSU72Q9NP77 RNU2-9P-201ENST00000410194 145 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 RPL35AP24-201ENST00000413846 330 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 RPL26P29-201ENST00000415623 438 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC008280.1-201ENST00000418851 412 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 IFNA20P-201ENST00000436840 528 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC073465.2-201ENST00000440938 498 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 EIF5AP4-201ENST00000441206 465 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 BRK1P2-201ENST00000442875 223 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 SPRYD7P1-201ENST00000443861 570 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 NXT1P1-201ENST00000458481 316 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 RN7SL393P-201ENST00000463588 296 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 DUTP1-201ENST00000493631 470 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 GAPDHP56-201ENST00000506031 988 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC098976.1-201ENST00000513014 541 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 ZNF519P4-201ENST00000514008 125 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 SNORD60.2-201ENST00000516883 86 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC090572.1-201ENST00000519251 160 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC024405.1-201ENST00000532521 1042 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 ELOCP31-201ENST00000540463 467 ntBASIC5.69□□□□□ -1.5
SSU72Q9NP77 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.69□□□□□ -1.5
SSU72Q9NP77 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms