Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.13□□□□□ -1.75
CCDC65Q8IXS2 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AL133383.2-201ENST00000622958 2336 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 RNA5SP515-201ENST00000364570 118 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 RNA5SP167-201ENST00000365461 116 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 SOD2P1-201ENST00000396543 562 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 RN7SKP156-201ENST00000410308 342 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 HMGB3P20-201ENST00000417997 600 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AC099563.1-201ENST00000456086 418 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AC022034.3-201ENST00000471393 478 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AC092451.1-201ENST00000480211 153 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AC005912.1-201ENST00000495392 255 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 UBE2CP3-201ENST00000502715 450 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 NPM1P41-201ENST00000512920 831 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AC093853.1-201ENST00000515689 483 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 RNU6-760P-201ENST00000516078 97 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 OR7E13P-201ENST00000526052 910 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 MIR5187-201ENST00000583479 76 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 SS18L2P2-201ENST00000583960 235 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AC123768.4-201ENST00000616244 701 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 AP001148.1-201ENST00000624124 2359 ntBASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC65Q8IXS2 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AL139247.1-201ENST00000422768 325 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AL138799.3-201ENST00000438968 350 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 NANOGP10-201ENST00000453325 895 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AL133162.1-201ENST00000463228 453 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC021205.1-201ENST00000468797 348 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 HMGB1P3-201ENST00000502802 616 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC093770.1-201ENST00000511559 571 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC022790.1-201ENST00000522872 204 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 MTND5P21-201ENST00000531961 522 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 MIR3186-201ENST00000577404 85 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC024941.1-201ENST00000612250 334 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 AC138649.5-201ENST00000637456 137 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 DCAF13P3-201ENST00000561147 1334 ntBASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC65Q8IXS2 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 CEP170P1-201ENST00000502249 4587 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 SNORA57.3-201ENST00000411095 141 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 AC069218.2-201ENST00000411665 344 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 AC048351.1-201ENST00000420064 602 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 OR4F13P-201ENST00000428478 931 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 SKP1P1-201ENST00000438081 489 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 AC009263.1-201ENST00000441193 1239 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 MTND3P4-201ENST00000453537 303 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 MTCO1P30-201ENST00000515244 580 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 RNU6-889P-201ENST00000517189 103 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 AC008011.1-201ENST00000545989 227 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 TRAV15-201ENST00000556680 249 ntBASIC4.1□□□□□ -1.75
CCDC65Q8IXS2 AC006270.2-201ENST00000578523 652 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms