Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 AL591424.2-201ENST00000617023 128 ntBASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 AL139089.1-201ENST00000620372 975 ntBASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 AP003400.6-201ENST00000624698 740 ntBASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 CDRT1-208ENST00000630868 794 ntBASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 AL590396.2-201ENST00000636511 1041 ntBASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
C9orf40Q8IXQ3 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC011155.1-201ENST00000316512 456 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 RNU6-146P-201ENST00000384602 108 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 MTATP6P31-201ENST00000406985 692 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC092745.2-202ENST00000411880 369 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC234782.4-201ENST00000417646 1048 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AL158073.1-201ENST00000426848 1104 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 FO393414.1-201ENST00000428697 1184 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 RPL12P46-201ENST00000436610 195 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 RANP8-201ENST00000444720 713 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 RPL37P3-201ENST00000456825 293 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 RPL23AP71-201ENST00000470966 469 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC020898.1-201ENST00000474167 787 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AL035404.1-201ENST00000497982 568 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 HMGB1P23-201ENST00000518743 568 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AP003102.1-201ENST00000525638 661 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC091515.1-201ENST00000548110 679 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC090751.1-201ENST00000566966 267 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 RN7SL622P-201ENST00000585292 275 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC005255.1-201ENST00000593748 216 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC015726.1-201ENST00000602353 681 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC128687.2-201ENST00000609657 566 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC123768.4-201ENST00000616244 701 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AC083899.2-201ENST00000423285 1376 ntBASIC3.63□□□□□ -1.83
C9orf40Q8IXQ3 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 RNU6-468P-201ENST00000384003 109 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC011742.1-201ENST00000431448 434 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 RPS20P1-201ENST00000434853 354 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 TPTE2P3-201ENST00000441562 1189 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 GXYLT1P1-201ENST00000446657 490 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 HMGB1P16-201ENST00000447155 540 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 OR9M1P-201ENST00000459641 921 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AL672167.3-201ENST00000465951 960 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 RPS3AP6-201ENST00000484430 795 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 UBA52P3-201ENST00000491303 382 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 RPL7P24-201ENST00000493052 752 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC104108.1-201ENST00000509930 412 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 RNU6-352P-201ENST00000516908 107 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.62□□□□□ -1.83
C9orf40Q8IXQ3 AC011611.5-201ENST00000552477 578 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms