Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
RNF4P78317 ZNF652P1-201ENST00000442420 1309 ntBASIC5.48□□□□□ -1.53
RNF4P78317 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 RNU1-150P-201ENST00000362491 162 ntBASIC5.47□□□□□ -1.53
RNF4P78317 RNA5SP394-201ENST00000364216 119 ntBASIC5.47□□□□□ -1.53
RNF4P78317 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
RNF4P78317 Y_RNA.394-201ENST00000383942 103 ntBASIC5.47□□□□□ -1.53
RNF4P78317 RNA5SP251-201ENST00000410614 137 ntBASIC5.47□□□□□ -1.53
RNF4P78317 RPL12P9-201ENST00000412942 488 ntBASIC5.47□□□□□ -1.53
RNF4P78317 USP9YP20-201ENST00000419224 558 ntBASIC5.47□□□□□ -1.53
RNF4P78317 RPS3P2-201ENST00000421346 701 ntBASIC5.47□□□□□ -1.53
RNF4P78317 NPM1P24-201ENST00000428039 894 ntBASIC5.47□□□□□ -1.53
RNF4P78317 BX323845.3-201ENST00000428215 527 ntBASIC5.47□□□□□ -1.53
RNF4P78317 RPL23AP30-201ENST00000432419 501 ntBASIC5.47□□□□□ -1.53
RNF4P78317 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.47□□□□□ -1.53
RNF4P78317 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.47□□□□□ -1.53
RNF4P78317 RPL12P11-201ENST00000439970 501 ntBASIC5.47□□□□□ -1.53
RNF4P78317 CEACAMP9-201ENST00000442990 513 ntBASIC5.47□□□□□ -1.53
RNF4P78317 HSPE1P28-201ENST00000443139 211 ntBASIC5.47□□□□□ -1.53
RNF4P78317 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.47□□□□□ -1.53
RNF4P78317 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.47□□□□□ -1.53
RNF4P78317 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC5.47□□□□□ -1.53
RNF4P78317 AC140076.1-201ENST00000449897 361 ntBASIC5.47□□□□□ -1.53
RNF4P78317 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.47□□□□□ -1.53
RNF4P78317 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.47□□□□□ -1.53
RNF4P78317 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.47□□□□□ -1.53
RNF4P78317 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.47□□□□□ -1.53
RNF4P78317 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.47□□□□□ -1.53
RNF4P78317 FGF7P4-201ENST00000509595 295 ntBASIC5.47□□□□□ -1.53
RNF4P78317 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.47□□□□□ -1.53
RNF4P78317 AC107934.1-201ENST00000522215 217 ntBASIC5.47□□□□□ -1.53
RNF4P78317 EIF4A2P5-201ENST00000529914 499 ntBASIC5.47□□□□□ -1.53
RNF4P78317 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.47□□□□□ -1.53
RNF4P78317 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC5.47□□□□□ -1.53
RNF4P78317 HAUS8P1-201ENST00000549005 542 ntBASIC5.47□□□□□ -1.53
RNF4P78317 AL049779.3-201ENST00000557141 606 ntBASIC5.47□□□□□ -1.53
RNF4P78317 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.47□□□□□ -1.53
RNF4P78317 AC055876.1-202ENST00000567053 138 ntBASIC5.47□□□□□ -1.53
RNF4P78317 MIR4310-201ENST00000582950 57 ntBASIC5.47□□□□□ -1.53
RNF4P78317 COX6CP7-201ENST00000597056 208 ntBASIC5.47□□□□□ -1.53
RNF4P78317 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.47□□□□□ -1.53
RNF4P78317 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.47□□□□□ -1.53
RNF4P78317 AC000123.2-201ENST00000623124 461 ntBASIC5.47□□□□□ -1.53
RNF4P78317 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC5.47□□□□□ -1.53
RNF4P78317 AC138649.5-201ENST00000637456 137 ntBASIC5.47□□□□□ -1.53
RNF4P78317 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
RNF4P78317 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.47□□□□□ -1.53
RNF4P78317 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
RNF4P78317 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 OR9K1P-202ENST00000641111 3217 ntBASIC5.47□□□□□ -1.53
RNF4P78317 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.47□□□□□ -1.53
RNF4P78317 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
RNF4P78317 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
RNF4P78317 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
RNF4P78317 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.47□□□□□ -1.53
RNF4P78317 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
RNF4P78317 Z95114.1-201ENST00000624264 14574 ntBASIC5.46□□□□□ -1.53
RNF4P78317 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
RNF4P78317 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
RNF4P78317 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
RNF4P78317 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.46□□□□□ -1.53
RNF4P78317 HSPA8P14-201ENST00000552265 1805 ntBASIC5.46□□□□□ -1.53
RNF4P78317 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
RNF4P78317 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 AC020656.2-201ENST00000613291 5309 ntBASIC5.46□□□□□ -1.54
RNF4P78317 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.46□□□□□ -1.54
RNF4P78317 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.46□□□□□ -1.54
RNF4P78317 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.46□□□□□ -1.54
RNF4P78317 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
RNF4P78317 Y_RNA.157-201ENST00000363638 102 ntBASIC5.46□□□□□ -1.54
RNF4P78317 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.46□□□□□ -1.54
RNF4P78317 RNU6-1158P-201ENST00000391167 107 ntBASIC5.46□□□□□ -1.54
RNF4P78317 RNU6-332P-201ENST00000391193 108 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AL096800.1-201ENST00000405326 893 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AC211486.3-201ENST00000412694 621 ntBASIC5.46□□□□□ -1.54
RNF4P78317 GSTM3P2-201ENST00000412746 530 ntBASIC5.46□□□□□ -1.54
RNF4P78317 MTCO2P5-201ENST00000422621 426 ntBASIC5.46□□□□□ -1.54
RNF4P78317 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.46□□□□□ -1.54
RNF4P78317 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC5.46□□□□□ -1.54
RNF4P78317 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.46□□□□□ -1.54
RNF4P78317 AC126120.1-201ENST00000431082 470 ntBASIC5.46□□□□□ -1.54
RNF4P78317 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.46□□□□□ -1.54
RNF4P78317 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.46□□□□□ -1.54
RNF4P78317 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms