Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA3P55318 NPM1P45-201ENST00000583151 559 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA3P55318 AL356218.2-201ENST00000605264 187 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC2.65□□□□□ -1.99
FOXA3P55318 Mico1.1-201ENST00000611698 204 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AC243654.2-201ENST00000612843 443 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
FOXA3P55318 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
FOXA3P55318 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
FOXA3P55318 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
FOXA3P55318 NMD3P1-201ENST00000439704 1488 ntBASIC2.65□□□□□ -1.99
FOXA3P55318 AC093908.1-201ENST00000623125 8092 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA3P55318 RLIMP1-201ENST00000339626 1680 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 FAM91A3P-201ENST00000456826 2544 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA3P55318 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
FOXA3P55318 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA3P55318 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA3P55318 MIR320B1-201ENST00000390209 79 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 AL133270.1-201ENST00000402635 279 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA3P55318 AC013404.1-201ENST00000413068 249 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA3P55318 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA3P55318 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA3P55318 COX6CP17-201ENST00000421389 185 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 TRIAP1P1-201ENST00000427062 225 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA3P55318 UBDP1-202ENST00000457888 382 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 RPL23AP67-201ENST00000465341 474 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 AC022336.1-201ENST00000475510 337 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 AC110792.1-201ENST00000491826 472 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC2.64□□□□□ -1.99
FOXA3P55318 RNA5SP380-201ENST00000517190 98 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA3P55318 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
FOXA3P55318 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA3P55318 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA3P55318 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
FOXA3P55318 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC2.64□□□□□ -1.99
FOXA3P55318 AC010735.1-201ENST00000567305 1026 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 AC024940.4-201ENST00000605507 246 ntBASIC2.64□□□□□ -1.99
FOXA3P55318 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC2.64□□□□□ -1.99
FOXA3P55318 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
FOXA3P55318 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.64□□□□□ -1.99
FOXA3P55318 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA3P55318 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC2.64□□□□□ -1.99
FOXA3P55318 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
FOXA3P55318 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC2.63□□□□□ -1.99
FOXA3P55318 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA3P55318 MTND5P27-201ENST00000428871 1720 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA3P55318 MIR148B-201ENST00000362252 99 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
FOXA3P55318 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
FOXA3P55318 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.63□□□□□ -1.99
FOXA3P55318 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA3P55318 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA3P55318 RPL23AP82-202ENST00000427528 469 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 MTCO1P43-201ENST00000431831 488 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA3P55318 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA3P55318 NDUFA12P1-201ENST00000455914 406 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 CENPBD1P1-201ENST00000464061 469 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA3P55318 RNU6-352P-201ENST00000516908 107 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA3P55318 SOD1P3-201ENST00000518682 454 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA3P55318 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA3P55318 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA3P55318 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXA3P55318 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA3P55318 RNU1-30P-201ENST00000606575 163 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC2.63□□□□□ -1.99
FOXA3P55318 AC121761.2-201ENST00000617300 689 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 AC116563.2-201ENST00000624751 535 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXA3P55318 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA3P55318 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.63□□□□□ -1.99
FOXA3P55318 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXA3P55318 CCT8P1-201ENST00000413611 1657 ntBASIC2.63□□□□□ -1.99
FOXA3P55318 AC017071.1-201ENST00000564407 2204 ntBASIC2.62□□□□□ -1.99
FOXA3P55318 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA3P55318 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXA3P55318 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA3P55318 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA3P55318 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA3P55318 MAPK10-362ENST00000641864 4484 ntBASIC2.62□□□□□ -1.99
FOXA3P55318 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA3P55318 SNORD56.3-201ENST00000363507 71 ntBASIC2.62□□□□□ -1.99
FOXA3P55318 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXA3P55318 MIR153-1-201ENST00000384914 90 ntBASIC2.62□□□□□ -1.99
FOXA3P55318 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
FOXA3P55318 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXA3P55318 RPL31P2-201ENST00000413849 377 ntBASIC2.62□□□□□ -1.99
FOXA3P55318 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms