Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.96□□□□□ -1.46
LIG3P49916 MIR98-201ENST00000606724 119 ntBASIC5.96□□□□□ -1.46
LIG3P49916 AL359697.1-201ENST00000624879 587 ntBASIC5.96□□□□□ -1.46
LIG3P49916 MTND1P37-201ENST00000636562 264 ntBASIC5.96□□□□□ -1.46
LIG3P49916 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.96□□□□□ -1.46
LIG3P49916 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.46
LIG3P49916 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
LIG3P49916 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
LIG3P49916 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.96□□□□□ -1.46
LIG3P49916 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
LIG3P49916 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.96□□□□□ -1.46
LIG3P49916 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
LIG3P49916 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.96□□□□□ -1.46
LIG3P49916 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
LIG3P49916 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
LIG3P49916 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LIG3P49916 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
LIG3P49916 Y_RNA.46-201ENST00000362695 102 ntBASIC5.95□□□□□ -1.46
LIG3P49916 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LIG3P49916 SNORA51.6-201ENST00000384151 125 ntBASIC5.95□□□□□ -1.46
LIG3P49916 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
LIG3P49916 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 AL049693.1-201ENST00000402760 611 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AL035660.1-201ENST00000422041 222 ntBASIC5.95□□□□□ -1.46
LIG3P49916 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.95□□□□□ -1.46
LIG3P49916 AC096632.1-201ENST00000427395 310 ntBASIC5.95□□□□□ -1.46
LIG3P49916 NPM1P24-201ENST00000428039 894 ntBASIC5.95□□□□□ -1.46
LIG3P49916 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 AL445928.1-201ENST00000435545 222 ntBASIC5.95□□□□□ -1.46
LIG3P49916 CALM1P1-201ENST00000442082 433 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC5.95□□□□□ -1.46
LIG3P49916 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.95□□□□□ -1.46
LIG3P49916 FHP1-201ENST00000442741 703 ntBASIC5.95□□□□□ -1.46
LIG3P49916 RPL23AP20-201ENST00000447965 421 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.95□□□□□ -1.46
LIG3P49916 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5.95□□□□□ -1.46
LIG3P49916 FRG2FP-204ENST00000453982 852 ntBASIC5.95□□□□□ -1.46
LIG3P49916 ACA64.4-201ENST00000459070 127 ntBASIC5.95□□□□□ -1.46
LIG3P49916 ABCC13-202ENST00000463099 3842 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AC006511.1-201ENST00000470614 315 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AP001025.2-201ENST00000490908 477 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AC034222.1-201ENST00000494052 532 ntBASIC5.95□□□□□ -1.46
LIG3P49916 RNU6-714P-201ENST00000516963 103 ntBASIC5.95□□□□□ -1.46
LIG3P49916 RNU6-201P-201ENST00000517100 61 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AC022616.6-201ENST00000520479 119 ntBASIC5.95□□□□□ -1.46
LIG3P49916 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.95□□□□□ -1.46
LIG3P49916 AC022861.1-201ENST00000522981 663 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.95□□□□□ -1.46
LIG3P49916 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC5.95□□□□□ -1.46
LIG3P49916 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC5.95□□□□□ -1.46
LIG3P49916 AC009962.1-201ENST00000567327 3813 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC5.95□□□□□ -1.46
LIG3P49916 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC5.95□□□□□ -1.46
LIG3P49916 AC027243.2-201ENST00000602530 724 ntBASIC5.95□□□□□ -1.46
LIG3P49916 PSMA6P4-201ENST00000603247 718 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AL133481.2-203ENST00000607558 139 ntBASIC5.95□□□□□ -1.46
LIG3P49916 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.95□□□□□ -1.46
LIG3P49916 AP006248.2-201ENST00000623309 592 ntBASIC5.95□□□□□ -1.46
LIG3P49916 AC092326.2-201ENST00000624772 1561 ntBASIC5.95□□□□□ -1.46
LIG3P49916 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.95□□□□□ -1.46
LIG3P49916 AC010149.2-201ENST00000637608 315 ntBASIC5.95□□□□□ -1.46
LIG3P49916 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
LIG3P49916 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
LIG3P49916 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.95□□□□□ -1.46
LIG3P49916 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
LIG3P49916 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
LIG3P49916 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
LIG3P49916 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 AC093849.1-201ENST00000563631 2209 ntBASIC5.94□□□□□ -1.46
LIG3P49916 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LIG3P49916 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.94□□□□□ -1.46
LIG3P49916 RNU1-150P-201ENST00000362491 162 ntBASIC5.94□□□□□ -1.46
LIG3P49916 U3.7-201ENST00000363668 216 ntBASIC5.94□□□□□ -1.46
LIG3P49916 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 ARF4P3-201ENST00000397387 509 ntBASIC5.94□□□□□ -1.46
LIG3P49916 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.94□□□□□ -1.46
LIG3P49916 AC016739.1-201ENST00000405359 345 ntBASIC5.94□□□□□ -1.46
LIG3P49916 MYL6P5-201ENST00000412707 459 ntBASIC5.94□□□□□ -1.46
LIG3P49916 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.94□□□□□ -1.46
LIG3P49916 GNG5P5-201ENST00000420444 220 ntBASIC5.94□□□□□ -1.46
LIG3P49916 RPL7P57-201ENST00000423238 740 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AC099677.3-201ENST00000427081 395 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.94□□□□□ -1.46
LIG3P49916 RPS26P56-201ENST00000444468 240 ntBASIC5.94□□□□□ -1.46
LIG3P49916 AC073109.1-201ENST00000445066 978 ntBASIC5.94□□□□□ -1.46
LIG3P49916 CBX1P2-201ENST00000453841 458 ntBASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms