Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A3P25940 HMGN2P8-201ENST00000391458 268 ntBASIC4.11□□□□□ -1.75
COL5A3P25940 RPS24P12-201ENST00000402084 394 ntBASIC4.11□□□□□ -1.75
COL5A3P25940 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.11□□□□□ -1.75
COL5A3P25940 AL390334.1-201ENST00000556395 450 ntBASIC4.11□□□□□ -1.75
COL5A3P25940 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.11□□□□□ -1.75
COL5A3P25940 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.11□□□□□ -1.75
COL5A3P25940 AL356321.1-201ENST00000621360 228 ntBASIC4.11□□□□□ -1.75
COL5A3P25940 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.11□□□□□ -1.75
COL5A3P25940 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.11□□□□□ -1.75
COL5A3P25940 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A3P25940 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL5A3P25940 AC017007.4-201ENST00000503353 1352 ntBASIC4.11□□□□□ -1.75
COL5A3P25940 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL5A3P25940 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL5A3P25940 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
COL5A3P25940 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL5A3P25940 MTCO1P7-201ENST00000419523 1542 ntBASIC4.1□□□□□ -1.75
COL5A3P25940 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL5A3P25940 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
COL5A3P25940 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.1□□□□□ -1.75
COL5A3P25940 EEF1A1P41-201ENST00000414667 207 ntBASIC4.1□□□□□ -1.75
COL5A3P25940 BX890604.2-201ENST00000427883 474 ntBASIC4.1□□□□□ -1.75
COL5A3P25940 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC4.1□□□□□ -1.75
COL5A3P25940 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.1□□□□□ -1.75
COL5A3P25940 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL5A3P25940 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.1□□□□□ -1.75
COL5A3P25940 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.1□□□□□ -1.75
COL5A3P25940 IGHV3-29-201ENST00000604817 344 ntBASIC4.1□□□□□ -1.75
COL5A3P25940 AC107294.1-201ENST00000609524 467 ntBASIC4.1□□□□□ -1.75
COL5A3P25940 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 AC073869.7-201ENST00000640874 297 ntBASIC4.1□□□□□ -1.75
COL5A3P25940 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL5A3P25940 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.1□□□□□ -1.75
COL5A3P25940 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
COL5A3P25940 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.1□□□□□ -1.75
COL5A3P25940 OR5H2-201ENST00000355273 945 ntBASIC4.09□□□□□ -1.75
COL5A3P25940 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
COL5A3P25940 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.09□□□□□ -1.75
COL5A3P25940 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.09□□□□□ -1.75
COL5A3P25940 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.09□□□□□ -1.75
COL5A3P25940 HNRNPKP5-201ENST00000515300 253 ntBASIC4.09□□□□□ -1.75
COL5A3P25940 AC026801.2-201ENST00000515352 425 ntBASIC4.09□□□□□ -1.75
COL5A3P25940 RNA5SP356-201ENST00000515972 94 ntBASIC4.09□□□□□ -1.75
COL5A3P25940 MYL12AP1-201ENST00000518490 515 ntBASIC4.09□□□□□ -1.75
COL5A3P25940 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.09□□□□□ -1.75
COL5A3P25940 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.09□□□□□ -1.75
COL5A3P25940 AC010653.1-201ENST00000571108 881 ntBASIC4.09□□□□□ -1.75
COL5A3P25940 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.09□□□□□ -1.75
COL5A3P25940 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL5A3P25940 AL672296.1-201ENST00000427780 2158 ntBASIC4.09□□□□□ -1.75
COL5A3P25940 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.75
COL5A3P25940 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL5A3P25940 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL5A3P25940 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.09□□□□□ -1.76
COL5A3P25940 SSR1P1-201ENST00000407630 814 ntBASIC4.09□□□□□ -1.76
COL5A3P25940 RN7SKP284-201ENST00000411002 343 ntBASIC4.09□□□□□ -1.76
COL5A3P25940 FTLP19-201ENST00000433300 394 ntBASIC4.09□□□□□ -1.76
COL5A3P25940 RPL23AP71-201ENST00000470966 469 ntBASIC4.09□□□□□ -1.76
COL5A3P25940 AC011270.1-201ENST00000558606 583 ntBASIC4.09□□□□□ -1.76
COL5A3P25940 AC106785.3-201ENST00000564064 847 ntBASIC4.09□□□□□ -1.76
COL5A3P25940 KC877982.1-201ENST00000602313 470 ntBASIC4.09□□□□□ -1.76
COL5A3P25940 AC015813.4-201ENST00000610469 179 ntBASIC4.09□□□□□ -1.76
COL5A3P25940 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL5A3P25940 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL5A3P25940 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.09□□□□□ -1.76
COL5A3P25940 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
COL5A3P25940 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
COL5A3P25940 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.09□□□□□ -1.76
COL5A3P25940 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL5A3P25940 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
COL5A3P25940 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
COL5A3P25940 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL5A3P25940 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL5A3P25940 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL5A3P25940 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL5A3P25940 AL136116.1-201ENST00000403591 381 ntBASIC4.08□□□□□ -1.76
COL5A3P25940 AL591623.2-201ENST00000449978 222 ntBASIC4.08□□□□□ -1.76
COL5A3P25940 AC239809.1-201ENST00000450470 217 ntBASIC4.08□□□□□ -1.76
COL5A3P25940 KC877373.1-201ENST00000479066 408 ntBASIC4.08□□□□□ -1.76
COL5A3P25940 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.08□□□□□ -1.76
COL5A3P25940 AL121576.1-201ENST00000556055 276 ntBASIC4.08□□□□□ -1.76
COL5A3P25940 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.08□□□□□ -1.76
COL5A3P25940 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.08□□□□□ -1.76
COL5A3P25940 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.08□□□□□ -1.76
COL5A3P25940 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.08□□□□□ -1.76
COL5A3P25940 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.08□□□□□ -1.76
COL5A3P25940 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.08□□□□□ -1.76
COL5A3P25940 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
COL5A3P25940 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL5A3P25940 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
COL5A3P25940 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms