Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LDHBP3-201ENST00000514909 822 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A1P20908 MIR3945-201ENST00000581853 98 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.33□□□□□ -1.88
COL5A1P20908 DDX6P1-205ENST00000441966 1436 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.33□□□□□ -1.88
COL5A1P20908 Z83843.1-201ENST00000604070 3685 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.33□□□□□ -1.88
COL5A1P20908 ZNF90P1-201ENST00000480493 1951 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
COL5A1P20908 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A1P20908 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A1P20908 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.33□□□□□ -1.88
COL5A1P20908 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A1P20908 SNORA48.8-201ENST00000391324 134 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 MTATP6P19-201ENST00000413797 659 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 LIPT1P1-201ENST00000415870 1186 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 OOSP1P1-201ENST00000423265 274 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.33□□□□□ -1.88
COL5A1P20908 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A1P20908 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A1P20908 RPS20P1-201ENST00000434853 354 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL5A1P20908 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A1P20908 IGKV2-26-201ENST00000518305 343 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 AC024341.1-201ENST00000526444 1552 ntBASIC3.33□□□□□ -1.88
COL5A1P20908 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.33□□□□□ -1.88
COL5A1P20908 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.33□□□□□ -1.88
COL5A1P20908 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.33□□□□□ -1.88
COL5A1P20908 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A1P20908 TTC39DP-201ENST00000416781 1688 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 AL645937.1-201ENST00000641739 1652 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.32□□□□□ -1.88
COL5A1P20908 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC3.32□□□□□ -1.88
COL5A1P20908 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC3.32□□□□□ -1.88
COL5A1P20908 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.32□□□□□ -1.88
COL5A1P20908 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A1P20908 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A1P20908 NCAPGP1-201ENST00000505112 1814 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A1P20908 RNU1-140P-201ENST00000365040 165 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.32□□□□□ -1.88
COL5A1P20908 AL121578.1-201ENST00000428051 892 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 NDUFB1P1-201ENST00000435191 180 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 BTG3P1-201ENST00000435859 716 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.32□□□□□ -1.88
COL5A1P20908 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.32□□□□□ -1.88
COL5A1P20908 CCDC75P1-201ENST00000469247 791 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 RPL27AP5-201ENST00000469428 449 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 AC023598.1-201ENST00000472521 361 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 RN7SL504P-201ENST00000494496 287 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.32□□□□□ -1.88
COL5A1P20908 AC110794.1-201ENST00000505816 425 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.32□□□□□ -1.88
COL5A1P20908 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL5A1P20908 CR383656.14-201ENST00000551951 406 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC3.32□□□□□ -1.88
COL5A1P20908 AC084036.1-201ENST00000609190 508 ntBASIC3.32□□□□□ -1.88
COL5A1P20908 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC3.32□□□□□ -1.88
COL5A1P20908 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
COL5A1P20908 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC3.32□□□□□ -1.88
COL5A1P20908 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
COL5A1P20908 PROS2P-201ENST00000474651 1951 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A1P20908 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
COL5A1P20908 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A1P20908 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A1P20908 CR381670.1-201ENST00000624291 1693 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
COL5A1P20908 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A1P20908 BX323014.1-201ENST00000412876 237 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AL355994.1-201ENST00000424379 260 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.31□□□□□ -1.88
COL5A1P20908 MTND2P25-201ENST00000449028 610 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A1P20908 AP001992.1-205ENST00000462248 379 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AC084357.1-201ENST00000473404 255 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.31□□□□□ -1.88
COL5A1P20908 AC112198.1-201ENST00000505369 1220 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.31□□□□□ -1.88
COL5A1P20908 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.31□□□□□ -1.88
COL5A1P20908 AC005476.1-201ENST00000554427 397 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AC006539.2-201ENST00000601729 572 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AL451049.1-201ENST00000608672 497 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 RMST_9.1-201ENST00000619945 193 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AC244205.2-202ENST00000635781 342 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AL732372.2-225ENST00000642124 456 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A1P20908 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
COL5A1P20908 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A1P20908 NMD3P1-201ENST00000439704 1488 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 AL356489.2-201ENST00000566968 3528 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.31□□□□□ -1.88
COL5A1P20908 TNPO1P3-201ENST00000436471 2662 ntBASIC3.31□□□□□ -1.88
COL5A1P20908 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.31□□□□□ -1.88
COL5A1P20908 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL5A1P20908 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
COL5A1P20908 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
COL5A1P20908 GCNT6-201ENST00000379591 934 ntBASIC3.3□□□□□ -1.88
COL5A1P20908 HMGN2P8-201ENST00000391458 268 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms