Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SALL4P2-201ENST00000423288 2910 ntBASIC4.73□□□□□ -1.65
VPS4AQ9UN37 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC009313.2-201ENST00000417893 1941 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC079741.1-201ENST00000321498 212 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 RNU5D-1-201ENST00000363299 116 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 RNU6-1066P-201ENST00000363573 105 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 RN7SKP227-201ENST00000364445 330 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 SNORA70.10-201ENST00000384515 134 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 RPL36AP10-201ENST00000421785 322 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 THAP5P1-201ENST00000439089 262 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AL513533.1-201ENST00000453728 415 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC063943.1-201ENST00000465434 453 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC006967.1-201ENST00000467608 589 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC010350.1-201ENST00000504908 231 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 BTF3P13-201ENST00000513224 490 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC134698.5-201ENST00000519444 336 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 MTCO1P49-201ENST00000523429 802 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC012339.2-201ENST00000523996 453 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 CYCSP40-201ENST00000575927 294 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC068790.2-201ENST00000602601 557 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 DUXAP11-201ENST00000603858 526 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 CLPTM1LP1-201ENST00000604519 484 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AL163642.2-201ENST00000604722 1019 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC018714.1-201ENST00000605028 208 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC112220.3-201ENST00000605502 502 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 OR2AS2P-201ENST00000606902 342 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 MIR6780A-201ENST00000615089 68 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC243756.2-201ENST00000618406 463 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AC104118.1-201ENST00000607625 1589 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS4AQ9UN37 ANKRD20A17P-201ENST00000511745 1330 ntBASIC4.72□□□□□ -1.65
VPS4AQ9UN37 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.71□□□□□ -1.65
VPS4AQ9UN37 PHKBP1-201ENST00000450951 1951 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC090017.1-201ENST00000548612 1779 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 Y_RNA.77-201ENST00000362962 107 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 RN7SKP224-201ENST00000364140 325 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 RNU4-24P-201ENST00000364565 139 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 TAF9BP1-201ENST00000396646 746 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 GLULP6-201ENST00000399502 913 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 RNU6-272P-201ENST00000411028 104 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC068533.2-201ENST00000411872 306 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AL450992.3-201ENST00000413192 568 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 TMBIM7P-201ENST00000418074 855 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC007559.1-201ENST00000428736 355 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 SKP1P3-201ENST00000429280 487 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 MTND1P20-201ENST00000430341 950 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC092162.1-201ENST00000432828 434 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC098826.1-201ENST00000433943 471 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AL353597.2-202ENST00000434901 373 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 HMGB3P9-201ENST00000441799 583 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AL031584.1-201ENST00000447169 754 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC092754.2-201ENST00000463506 460 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 RN7SL817P-201ENST00000480777 288 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC011352.3-201ENST00000505162 593 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 Y_RNA.655-201ENST00000515919 96 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AF279873.1-201ENST00000523393 313 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 DYNLL1P4-201ENST00000549314 266 ntBASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.71□□□□□ -1.66
VPS4AQ9UN37 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 152.4 ms