Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC126121.1-201ENST00000482313 553 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 AC020890.1-201ENST00000491837 504 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 RPL30P11-201ENST00000495304 339 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 AC007016.1-201ENST00000512110 244 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC5.42□□□□□ -1.54
NUP88Q99567 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC5.42□□□□□ -1.54
NUP88Q99567 SOD1P3-201ENST00000518682 454 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.42□□□□□ -1.54
NUP88Q99567 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.42□□□□□ -1.54
NUP88Q99567 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.42□□□□□ -1.54
NUP88Q99567 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.42□□□□□ -1.54
NUP88Q99567 AC084783.1-201ENST00000565846 910 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 MIR4284-201ENST00000578924 81 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 AC069061.3-201ENST00000582254 823 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.42□□□□□ -1.54
NUP88Q99567 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC5.42□□□□□ -1.54
NUP88Q99567 AC106791.2-201ENST00000604680 391 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 AC093783.1-201ENST00000612976 329 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.42□□□□□ -1.54
NUP88Q99567 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
NUP88Q99567 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NUP88Q99567 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
NUP88Q99567 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NUP88Q99567 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.42□□□□□ -1.54
NUP88Q99567 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.42□□□□□ -1.54
NUP88Q99567 AC120338.1-201ENST00000625074 1541 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NUP88Q99567 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
NUP88Q99567 OR14L1P-202ENST00000641545 3009 ntBASIC5.42□□□□□ -1.54
NUP88Q99567 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
NUP88Q99567 AC107081.3-201ENST00000612715 2034 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 CDR1-202ENST00000625883 1485 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 OR56B2P-201ENST00000317102 954 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NUP88Q99567 Y_RNA.25-201ENST00000362528 102 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 SUGT1P1-201ENST00000379514 476 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 RSL24D1P4-201ENST00000400938 484 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
NUP88Q99567 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC5.41□□□□□ -1.54
NUP88Q99567 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC5.41□□□□□ -1.54
NUP88Q99567 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.41□□□□□ -1.54
NUP88Q99567 AC092634.6-201ENST00000418558 192 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AC090960.1-201ENST00000421072 306 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 CKS1BP6-201ENST00000424932 240 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AL593851.1-201ENST00000426171 157 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AL353597.2-202ENST00000434901 373 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC5.41□□□□□ -1.54
NUP88Q99567 AL591503.2-201ENST00000442314 1005 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 TPT1P12-201ENST00000448968 492 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AL122001.1-201ENST00000457027 370 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 CYCSP34-201ENST00000458172 304 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC5.41□□□□□ -1.54
NUP88Q99567 CCDC75P1-201ENST00000469247 791 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AC104763.1-201ENST00000475274 360 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 NAA50-206ENST00000493454 964 ntTSL 2 BASIC5.41□□□□□ -1.54
NUP88Q99567 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NUP88Q99567 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC5.41□□□□□ -1.54
NUP88Q99567 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.41□□□□□ -1.54
NUP88Q99567 UBE2NP1-201ENST00000545592 458 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC5.41□□□□□ -1.54
NUP88Q99567 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.41□□□□□ -1.54
NUP88Q99567 EIF5A2P1-201ENST00000564027 460 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.41□□□□□ -1.54
NUP88Q99567 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.41□□□□□ -1.54
NUP88Q99567 AC008782.1-201ENST00000603386 430 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AL133338.2-201ENST00000604292 736 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.41□□□□□ -1.54
NUP88Q99567 AC006270.3-201ENST00000605967 1036 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 AL122125.1-201ENST00000616999 600 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NUP88Q99567 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
NUP88Q99567 SAMMSON-213ENST00000641336 1521 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 RAD17P1-201ENST00000418130 2042 ntBASIC5.41□□□□□ -1.54
NUP88Q99567 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.41□□□□□ -1.54
NUP88Q99567 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
NUP88Q99567 ZNF137P-201ENST00000456718 1920 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.4□□□□□ -1.54
NUP88Q99567 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
NUP88Q99567 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
NUP88Q99567 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
NUP88Q99567 RNU1-85P-201ENST00000364127 164 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.4□□□□□ -1.54
NUP88Q99567 RNU6-146P-201ENST00000384602 108 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 RNU6-253P-201ENST00000384730 105 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 DSTNP4-201ENST00000399472 474 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.54
NUP88Q99567 TPT1P2-201ENST00000413105 503 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 AC008280.1-201ENST00000418851 412 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 AL592293.2-201ENST00000422292 996 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 RPL7AP25-201ENST00000423357 805 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 EIF4HP2-201ENST00000424380 563 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 TXNL1P1-201ENST00000429528 554 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.4□□□□□ -1.54
NUP88Q99567 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
NUP88Q99567 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 RN7SL385P-201ENST00000468873 276 ntBASIC5.4□□□□□ -1.54
NUP88Q99567 AC093267.1-201ENST00000489176 961 ntBASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms