Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC135352.1-201ENST00000506173 1418 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 Z95327.2-201ENST00000414579 1873 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AL451142.2-201ENST00000429076 2090 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AL391684.1-202ENST00000641293 1636 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC025031.4-201ENST00000621248 3271 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 RNU1-94P-201ENST00000362627 173 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 RNU6-582P-201ENST00000362989 107 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 SNORD116-23-201ENST00000384645 92 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AL133264.1-201ENST00000407157 562 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AL139098.1-201ENST00000407291 389 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 RPL31P52-201ENST00000407532 367 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 RNU4-25P-201ENST00000410569 230 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 NRBF2P2-201ENST00000413087 861 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 CYCSP10-201ENST00000417973 294 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC004690.1-201ENST00000418216 328 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 CHIAP3-201ENST00000423668 1133 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 RPS12P10-201ENST00000427031 377 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC092017.2-201ENST00000427600 362 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 MTATP6P26-201ENST00000445926 662 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 Z99714.1-201ENST00000450463 807 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AL133477.1-201ENST00000457472 514 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC126121.1-201ENST00000482313 553 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 DEFB109F-201ENST00000491870 277 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 NDUFB4P12-201ENST00000513465 390 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC015795.1-201ENST00000513669 327 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 RNU6-885P-201ENST00000516607 104 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 IGLVIV-65-201ENST00000517313 360 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC022882.1-201ENST00000532142 501 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 PDCL2P2-201ENST00000533651 189 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AP000619.3-201ENST00000535634 1127 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC068831.4-201ENST00000556118 109 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AL512506.2-201ENST00000624472 458 ntBASIC4.22□□□□□ -1.73
BEST3Q8N1M1 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.22□□□□□ -1.73
BEST3Q8N1M1 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
BEST3Q8N1M1 AL672167.1-203ENST00000641299 2975 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC016716.1-201ENST00000265882 708 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC068538.1-201ENST00000376856 336 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 SNORD96B-201ENST00000386148 79 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AL049693.1-201ENST00000402760 611 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AL080315.1-201ENST00000406055 466 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 HNRNPDP2-201ENST00000406475 478 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 RNA5SP146-201ENST00000410743 123 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 RPL21P108-201ENST00000413857 481 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AL008629.1-201ENST00000438615 184 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AL450263.2-201ENST00000439400 589 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC104651.2-201ENST00000447549 528 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 EIF4A1P11-201ENST00000451239 222 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC011276.1-201ENST00000469688 323 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC4.21□□□□□ -1.74
BEST3Q8N1M1 AC083829.1-201ENST00000503756 657 ntBASIC4.21□□□□□ -1.74
BEST3Q8N1M1 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms