Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.18□□□□□ -1.9
CHD3Q12873 MIR6852-201ENST00000621699 66 ntBASIC3.18□□□□□ -1.9
CHD3Q12873 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC3.18□□□□□ -1.9
CHD3Q12873 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.18□□□□□ -1.9
CHD3Q12873 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.18□□□□□ -1.9
CHD3Q12873 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHD3Q12873 AL049555.1-201ENST00000562834 1933 ntBASIC3.18□□□□□ -1.9
CHD3Q12873 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHD3Q12873 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
CHD3Q12873 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHD3Q12873 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHD3Q12873 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHD3Q12873 DPY19L1P2-201ENST00000426647 915 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 RPS26P47-201ENST00000427219 348 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC3.17□□□□□ -1.9
CHD3Q12873 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHD3Q12873 AC007424.1-203ENST00000554613 687 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 AP005205.1-201ENST00000563503 508 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 AC011816.2-201ENST00000607089 556 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHD3Q12873 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
CHD3Q12873 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHD3Q12873 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 GNG5P1-201ENST00000255500 204 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHD3Q12873 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
CHD3Q12873 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC009302.1-201ENST00000417147 390 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 PTP4A1P5-201ENST00000420305 455 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 IFNWP4-201ENST00000453148 294 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 RPS4XP2-201ENST00000458402 793 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 RPS4XP10-201ENST00000465034 731 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.17□□□□□ -1.9
CHD3Q12873 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC023161.2-201ENST00000551218 780 ntBASIC3.17□□□□□ -1.9
CHD3Q12873 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC3.17□□□□□ -1.9
CHD3Q12873 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.17□□□□□ -1.9
CHD3Q12873 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CHD3Q12873 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.17□□□□□ -1.9
CHD3Q12873 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.17□□□□□ -1.9
CHD3Q12873 SPATA2P1-201ENST00000431223 2055 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CHD3Q12873 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
CHD3Q12873 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CHD3Q12873 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CHD3Q12873 AC073073.2-201ENST00000609827 2578 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 RNU1-87P-201ENST00000363727 170 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 RNU6-729P-201ENST00000384399 107 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
CHD3Q12873 U3.26-201ENST00000391236 204 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.16□□□□□ -1.9
CHD3Q12873 NCSTNP1-201ENST00000406229 144 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 HMGB3P20-201ENST00000417997 600 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 AL159169.1-201ENST00000421119 127 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 RPL23AP82-202ENST00000427528 469 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 AC096638.2-201ENST00000434965 711 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 RPL37P3-201ENST00000456825 293 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 CENPBD1P1-201ENST00000464061 469 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
CHD3Q12873 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.16□□□□□ -1.9
CHD3Q12873 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC3.16□□□□□ -1.9
CHD3Q12873 AC099489.2-201ENST00000574976 260 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 MIR4325-201ENST00000583049 90 ntBASIC3.16□□□□□ -1.9
CHD3Q12873 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CHD3Q12873 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CHD3Q12873 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
CHD3Q12873 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC3.15□□□□□ -1.9
CHD3Q12873 MTND2P15-201ENST00000418575 892 ntBASIC3.15□□□□□ -1.9
CHD3Q12873 RPL21P109-201ENST00000422213 475 ntBASIC3.15□□□□□ -1.9
CHD3Q12873 RPL21P11-201ENST00000461458 483 ntBASIC3.15□□□□□ -1.9
CHD3Q12873 AC005726.1-201ENST00000494679 427 ntBASIC3.15□□□□□ -1.9
CHD3Q12873 OR5AP1P-201ENST00000529730 940 ntBASIC3.15□□□□□ -1.9
CHD3Q12873 AC092747.2-201ENST00000545069 983 ntBASIC3.15□□□□□ -1.9
CHD3Q12873 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.15□□□□□ -1.9
CHD3Q12873 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.15□□□□□ -1.9
CHD3Q12873 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.15□□□□□ -1.9
CHD3Q12873 AC022149.2-201ENST00000621061 203 ntBASIC3.15□□□□□ -1.9
CHD3Q12873 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.15□□□□□ -1.9
CHD3Q12873 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.15□□□□□ -1.9
CHD3Q12873 OR6C71P-202ENST00000641886 1107 ntBASIC3.15□□□□□ -1.9
CHD3Q12873 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
CHD3Q12873 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.15□□□□□ -1.9
CHD3Q12873 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CHD3Q12873 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms