Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SNORA68.2-201ENST00000391263 128 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 AC104297.1-201ENST00000393779 870 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 OR5AW1P-201ENST00000426334 1006 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 HLA-N-201ENST00000437516 135 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 AC008885.1-201ENST00000514930 301 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 AC104984.5-201ENST00000586878 94 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 AC022960.2-201ENST00000616300 666 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
BRCA1P38398 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
BRCA1P38398 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.19□□□□□ -1.74
BRCA1P38398 AC123912.3-201ENST00000600907 1367 ntBASIC4.19□□□□□ -1.74
BRCA1P38398 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
BRCA1P38398 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
BRCA1P38398 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
BRCA1P38398 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.19□□□□□ -1.74
BRCA1P38398 NDUFB1P1-201ENST00000435191 180 ntBASIC4.19□□□□□ -1.74
BRCA1P38398 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.19□□□□□ -1.74
BRCA1P38398 AC005002.1-201ENST00000447458 540 ntBASIC4.19□□□□□ -1.74
BRCA1P38398 AC099563.1-201ENST00000456086 418 ntBASIC4.19□□□□□ -1.74
BRCA1P38398 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.19□□□□□ -1.74
BRCA1P38398 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
BRCA1P38398 AL645568.2-201ENST00000432815 1337 ntBASIC4.19□□□□□ -1.74
BRCA1P38398 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
BRCA1P38398 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 RNU1-108P-201ENST00000362556 161 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.18□□□□□ -1.74
BRCA1P38398 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 RNA5SP229-201ENST00000410809 99 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 RPS20P1-201ENST00000434853 354 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.18□□□□□ -1.74
BRCA1P38398 NPM1P39-201ENST00000449818 867 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC4.18□□□□□ -1.74
BRCA1P38398 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.18□□□□□ -1.74
BRCA1P38398 AC004924.1-201ENST00000480160 781 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.18□□□□□ -1.74
BRCA1P38398 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.18□□□□□ -1.74
BRCA1P38398 AC112198.1-201ENST00000505369 1220 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 AC110794.1-201ENST00000505816 425 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.18□□□□□ -1.74
BRCA1P38398 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.18□□□□□ -1.74
BRCA1P38398 CYP4A43P-201ENST00000568156 121 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.18□□□□□ -1.74
BRCA1P38398 SNORD39.4-201ENST00000620099 78 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.18□□□□□ -1.74
BRCA1P38398 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.18□□□□□ -1.74
BRCA1P38398 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
BRCA1P38398 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.18□□□□□ -1.74
BRCA1P38398 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 HSPA8P19-201ENST00000505359 1517 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.18□□□□□ -1.74
BRCA1P38398 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 OR13C3-201ENST00000374781 1108 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 RNU4-47P-201ENST00000410876 114 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 RPS29P31-201ENST00000446147 164 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
BRCA1P38398 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.18□□□□□ -1.74
BRCA1P38398 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.18□□□□□ -1.74
BRCA1P38398 AL137246.1-201ENST00000607072 977 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
BRCA1P38398 AC007656.2-201ENST00000624902 4547 ntBASIC4.18□□□□□ -1.74
BRCA1P38398 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 AC005183.1-201ENST00000603687 1979 ntBASIC4.17□□□□□ -1.74
BRCA1P38398 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 HLFP1-201ENST00000402375 499 ntBASIC4.17□□□□□ -1.74
BRCA1P38398 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC4.17□□□□□ -1.74
BRCA1P38398 AL356535.1-201ENST00000440335 398 ntBASIC4.17□□□□□ -1.74
BRCA1P38398 TPTE2P3-201ENST00000441562 1189 ntBASIC4.17□□□□□ -1.74
BRCA1P38398 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.17□□□□□ -1.74
BRCA1P38398 TRBV12-2-201ENST00000489763 344 ntBASIC4.17□□□□□ -1.74
BRCA1P38398 RPL12P22-201ENST00000519073 490 ntBASIC4.17□□□□□ -1.74
BRCA1P38398 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.17□□□□□ -1.74
BRCA1P38398 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC4.17□□□□□ -1.74
BRCA1P38398 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.17□□□□□ -1.74
BRCA1P38398 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.17□□□□□ -1.74
BRCA1P38398 EIF1P6-201ENST00000600054 334 ntBASIC4.17□□□□□ -1.74
BRCA1P38398 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.17□□□□□ -1.74
BRCA1P38398 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.17□□□□□ -1.74
BRCA1P38398 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
BRCA1P38398 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
BRCA1P38398 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
BRCA1P38398 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
BRCA1P38398 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.16□□□□□ -1.74
BRCA1P38398 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
BRCA1P38398 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.16□□□□□ -1.74
BRCA1P38398 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.16□□□□□ -1.74
BRCA1P38398 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.16□□□□□ -1.74
BRCA1P38398 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
BRCA1P38398 AC105272.1-201ENST00000438604 198 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms