Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MTND4P10-201ENST00000446199 1363 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN4P29074 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
PTPN4P29074 TRBV8-2-201ENST00000475637 270 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.08□□□□□ -1.76
PTPN4P29074 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.08□□□□□ -1.76
PTPN4P29074 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.08□□□□□ -1.76
PTPN4P29074 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.08□□□□□ -1.76
PTPN4P29074 OR5BC1P-201ENST00000529327 739 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 AP003049.1-201ENST00000529418 457 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.08□□□□□ -1.76
PTPN4P29074 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.08□□□□□ -1.76
PTPN4P29074 CENPUP2-201ENST00000555897 1186 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 AC104662.1-201ENST00000604448 511 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 AC005972.3-201ENST00000606304 481 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 AL021997.2-201ENST00000615674 271 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 AC008432.1-201ENST00000615912 1320 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 C2orf27A-204ENST00000623058 969 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 AC097460.3-201ENST00000623099 442 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC4.08□□□□□ -1.76
PTPN4P29074 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.08□□□□□ -1.76
PTPN4P29074 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
PTPN4P29074 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.08□□□□□ -1.76
PTPN4P29074 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PTPN4P29074 LINC00561-201ENST00000565815 2738 ntBASIC4.08□□□□□ -1.76
PTPN4P29074 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PTPN4P29074 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PTPN4P29074 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PTPN4P29074 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PTPN4P29074 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
PTPN4P29074 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PTPN4P29074 RNU1-18P-201ENST00000363062 164 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 RNU6-792P-201ENST00000363490 107 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 SNORA40.4-201ENST00000390971 128 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AL445189.1-201ENST00000405722 338 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 MIR1179-201ENST00000408703 91 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AC004987.3-201ENST00000413879 771 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.07□□□□□ -1.76
PTPN4P29074 BTF3P10-201ENST00000433415 495 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.07□□□□□ -1.76
PTPN4P29074 RNFT1P2-201ENST00000443064 757 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.07□□□□□ -1.76
PTPN4P29074 CYCSP53-201ENST00000455540 265 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 RPL21P71-201ENST00000465598 459 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AC010306.1-201ENST00000523223 1117 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.07□□□□□ -1.76
PTPN4P29074 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.07□□□□□ -1.76
PTPN4P29074 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.07□□□□□ -1.76
PTPN4P29074 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.07□□□□□ -1.76
PTPN4P29074 AC104229.1-201ENST00000561364 255 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.07□□□□□ -1.76
PTPN4P29074 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.07□□□□□ -1.76
PTPN4P29074 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.07□□□□□ -1.76
PTPN4P29074 AP000919.1-202ENST00000581139 1264 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.07□□□□□ -1.76
PTPN4P29074 AP000255.1-201ENST00000610276 676 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AC004825.2-201ENST00000616634 455 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AL161637.1-201ENST00000622380 412 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AC024595.1-201ENST00000623088 387 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AC112484.5-201ENST00000624189 228 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AC106730.3-201ENST00000624568 641 ntBASIC4.07□□□□□ -1.76
PTPN4P29074 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.07□□□□□ -1.76
PTPN4P29074 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PTPN4P29074 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.07□□□□□ -1.76
PTPN4P29074 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.07□□□□□ -1.76
PTPN4P29074 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
PTPN4P29074 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.06□□□□□ -1.76
PTPN4P29074 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTPN4P29074 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTPN4P29074 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.06□□□□□ -1.76
PTPN4P29074 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
PTPN4P29074 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
PTPN4P29074 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.06□□□□□ -1.76
PTPN4P29074 RNA5SP391-201ENST00000363456 119 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
PTPN4P29074 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.06□□□□□ -1.76
PTPN4P29074 RNU6-356P-201ENST00000384140 107 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 SNORA51.12-201ENST00000384448 134 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 MIR153-1-201ENST00000384914 90 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 AC025750.1-201ENST00000399891 379 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 HMGB3P31-201ENST00000413333 595 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 MFSD13B-201ENST00000420133 1290 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 VN1R42P-201ENST00000424651 344 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 RPS26P40-201ENST00000435209 294 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.06□□□□□ -1.76
PTPN4P29074 ARL5AP2-201ENST00000444698 533 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.06□□□□□ -1.76
PTPN4P29074 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.06□□□□□ -1.76
PTPN4P29074 SETP6-201ENST00000479329 568 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 RPS27AP13-201ENST00000498403 237 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.06□□□□□ -1.76
PTPN4P29074 KCTD9P2-201ENST00000512203 1013 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.06□□□□□ -1.76
PTPN4P29074 RNU6-1102P-201ENST00000516149 96 ntBASIC4.06□□□□□ -1.76
PTPN4P29074 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.06□□□□□ -1.76
PTPN4P29074 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.06□□□□□ -1.76
PTPN4P29074 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.06□□□□□ -1.76
PTPN4P29074 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.06□□□□□ -1.76
PTPN4P29074 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.06□□□□□ -1.76
PTPN4P29074 GNRHR2P1-201ENST00000555315 631 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms