Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RSL24D1P6-201ENST00000426934 401 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AC079807.1-201ENST00000429993 481 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AL451139.1-201ENST00000434718 346 ntBASIC6.09□□□□□ -1.43
MSX1P28360 UBBP5-201ENST00000446970 266 ntBASIC6.09□□□□□ -1.43
MSX1P28360 GSTA11P-201ENST00000452866 669 ntBASIC6.09□□□□□ -1.43
MSX1P28360 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 AC004801.2-202ENST00000463559 283 ntBASIC6.09□□□□□ -1.43
MSX1P28360 RPL22P13-201ENST00000493291 347 ntBASIC6.09□□□□□ -1.43
MSX1P28360 SCG5-207ENST00000497208 949 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX1P28360 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX1P28360 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX1P28360 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX1P28360 AC083906.1-201ENST00000509298 406 ntBASIC6.09□□□□□ -1.43
MSX1P28360 DEFB109D-201ENST00000529497 240 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX1P28360 AC022882.1-201ENST00000532142 501 ntBASIC6.09□□□□□ -1.43
MSX1P28360 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX1P28360 APPL2-203ENST00000546731 684 ntTSL 2 BASIC6.09□□□□□ -1.43
MSX1P28360 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX1P28360 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX1P28360 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX1P28360 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 AC115085.1-201ENST00000588924 229 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AC011921.2-201ENST00000589465 152 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.09□□□□□ -1.43
MSX1P28360 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.09□□□□□ -1.43
MSX1P28360 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.09□□□□□ -1.43
MSX1P28360 uc_338.29-201ENST00000615099 168 ntBASIC6.09□□□□□ -1.43
MSX1P28360 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC6.09□□□□□ -1.43
MSX1P28360 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX1P28360 MIR6778-201ENST00000617912 73 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AC005514.1-201ENST00000623521 208 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AC092608.2-201ENST00000624427 218 ntBASIC6.09□□□□□ -1.43
MSX1P28360 AC073593.1-201ENST00000624500 411 ntBASIC6.09□□□□□ -1.43
MSX1P28360 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX1P28360 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC6.09□□□□□ -1.43
MSX1P28360 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 AC097714.1-201ENST00000511272 1647 ntBASIC6.09□□□□□ -1.43
MSX1P28360 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
MSX1P28360 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
MSX1P28360 AL133243.4-201ENST00000623116 3109 ntBASIC6.09□□□□□ -1.43
MSX1P28360 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.44
MSX1P28360 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
MSX1P28360 AL442639.1-201ENST00000625030 1899 ntBASIC6.09□□□□□ -1.44
MSX1P28360 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
MSX1P28360 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.09□□□□□ -1.44
MSX1P28360 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX1P28360 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX1P28360 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.08□□□□□ -1.44
MSX1P28360 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 AL158163.1-201ENST00000603915 1649 ntBASIC6.08□□□□□ -1.44
MSX1P28360 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
MSX1P28360 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 SNORD3E-201ENST00000362899 217 ntBASIC6.08□□□□□ -1.44
MSX1P28360 RNU5A-8P-201ENST00000364102 114 ntBASIC6.08□□□□□ -1.44
MSX1P28360 Y_RNA.447-201ENST00000384184 113 ntBASIC6.08□□□□□ -1.44
MSX1P28360 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
MSX1P28360 RNU6-328P-201ENST00000390887 106 ntBASIC6.08□□□□□ -1.44
MSX1P28360 Y_RNA.645-201ENST00000391229 102 ntBASIC6.08□□□□□ -1.44
MSX1P28360 EIF4E2P1-201ENST00000393781 255 ntBASIC6.08□□□□□ -1.44
MSX1P28360 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
MSX1P28360 RNU4-64P-201ENST00000410795 131 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AL929472.1-201ENST00000417484 429 ntBASIC6.08□□□□□ -1.44
MSX1P28360 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 ACTR3BP6-201ENST00000422332 1241 ntBASIC6.08□□□□□ -1.44
MSX1P28360 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 RPL37P1-201ENST00000432310 284 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 AL359265.2-201ENST00000434367 631 ntBASIC6.08□□□□□ -1.44
MSX1P28360 ATP6V1G1P4-201ENST00000438388 335 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.08□□□□□ -1.44
MSX1P28360 AC234771.2-201ENST00000445718 597 ntBASIC6.08□□□□□ -1.44
MSX1P28360 PCNPP5-201ENST00000452246 481 ntBASIC6.08□□□□□ -1.44
MSX1P28360 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
MSX1P28360 AC023818.1-201ENST00000498379 384 ntBASIC6.08□□□□□ -1.44
MSX1P28360 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 FTH1P21-201ENST00000512179 511 ntBASIC6.08□□□□□ -1.44
MSX1P28360 RN7SKP96-201ENST00000516948 297 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 AL137161.1-201ENST00000532231 390 ntBASIC6.08□□□□□ -1.44
MSX1P28360 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.08□□□□□ -1.44
MSX1P28360 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.08□□□□□ -1.44
MSX1P28360 AC007375.1-201ENST00000554513 578 ntBASIC6.08□□□□□ -1.44
MSX1P28360 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.08□□□□□ -1.44
MSX1P28360 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms