Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VCANP13611 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.36□□□□□ -1.87
VCANP13611 U3.39-201ENST00000408569 239 ntBASIC3.36□□□□□ -1.87
VCANP13611 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.36□□□□□ -1.87
VCANP13611 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.36□□□□□ -1.87
VCANP13611 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.36□□□□□ -1.87
VCANP13611 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.36□□□□□ -1.87
VCANP13611 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.36□□□□□ -1.87
VCANP13611 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VCANP13611 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VCANP13611 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VCANP13611 BCORP1-203ENST00000513194 5093 ntBASIC3.36□□□□□ -1.87
VCANP13611 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.36□□□□□ -1.87
VCANP13611 Z95114.1-201ENST00000624264 14574 ntBASIC3.36□□□□□ -1.87
VCANP13611 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.36□□□□□ -1.87
VCANP13611 SNORA18.3-201ENST00000384122 132 ntBASIC3.36□□□□□ -1.87
VCANP13611 SNORA7.4-201ENST00000384249 137 ntBASIC3.36□□□□□ -1.87
VCANP13611 AC063976.3-201ENST00000426849 329 ntBASIC3.36□□□□□ -1.87
VCANP13611 RPS20P1-201ENST00000434853 354 ntBASIC3.36□□□□□ -1.87
VCANP13611 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.36□□□□□ -1.87
VCANP13611 AC068724.1-201ENST00000487100 792 ntBASIC3.36□□□□□ -1.87
VCANP13611 RNA5SP367-201ENST00000516557 118 ntBASIC3.36□□□□□ -1.87
VCANP13611 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
VCANP13611 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VCANP13611 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
VCANP13611 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
VCANP13611 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
VCANP13611 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 DYNLL1P7-201ENST00000429273 258 ntBASIC3.35□□□□□ -1.87
VCANP13611 UBE2D3P1-201ENST00000436669 444 ntBASIC3.35□□□□□ -1.87
VCANP13611 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.35□□□□□ -1.87
VCANP13611 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.35□□□□□ -1.87
VCANP13611 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.35□□□□□ -1.87
VCANP13611 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.35□□□□□ -1.87
VCANP13611 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 AC104687.1-201ENST00000485829 412 ntBASIC3.35□□□□□ -1.87
VCANP13611 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.35□□□□□ -1.87
VCANP13611 AC138761.3-201ENST00000579993 334 ntBASIC3.35□□□□□ -1.87
VCANP13611 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.35□□□□□ -1.87
VCANP13611 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC3.35□□□□□ -1.87
VCANP13611 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC3.35□□□□□ -1.87
VCANP13611 AC010168.2-201ENST00000562691 5428 ntBASIC3.35□□□□□ -1.87
VCANP13611 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 Y_RNA.269-201ENST00000364685 89 ntBASIC3.35□□□□□ -1.87
VCANP13611 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 OR51A3P-201ENST00000413596 924 ntBASIC3.35□□□□□ -1.87
VCANP13611 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC3.35□□□□□ -1.87
VCANP13611 OR9N1P-201ENST00000491296 333 ntBASIC3.35□□□□□ -1.87
VCANP13611 AC009812.2-201ENST00000517657 457 ntBASIC3.35□□□□□ -1.87
VCANP13611 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.35□□□□□ -1.87
VCANP13611 AC107016.2-201ENST00000547968 190 ntBASIC3.35□□□□□ -1.87
VCANP13611 AC068020.1-201ENST00000594215 661 ntBASIC3.35□□□□□ -1.87
VCANP13611 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC3.35□□□□□ -1.87
VCANP13611 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
VCANP13611 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VCANP13611 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC3.34□□□□□ -1.87
VCANP13611 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
VCANP13611 MIR184-201ENST00000384962 84 ntBASIC3.34□□□□□ -1.87
VCANP13611 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VCANP13611 BX119904.1-201ENST00000432026 348 ntBASIC3.34□□□□□ -1.87
VCANP13611 RN7SL585P-201ENST00000470538 280 ntBASIC3.34□□□□□ -1.87
VCANP13611 AC023598.1-201ENST00000472521 361 ntBASIC3.34□□□□□ -1.87
VCANP13611 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
VCANP13611 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
VCANP13611 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
VCANP13611 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
VCANP13611 VN1R8P-201ENST00000407739 893 ntBASIC3.34□□□□□ -1.87
VCANP13611 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.34□□□□□ -1.87
VCANP13611 AP000255.1-201ENST00000610276 676 ntBASIC3.34□□□□□ -1.87
VCANP13611 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.34□□□□□ -1.87
VCANP13611 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
VCANP13611 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
VCANP13611 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.88
VCANP13611 Y_RNA.540-201ENST00000384638 111 ntBASIC3.34□□□□□ -1.88
VCANP13611 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.88
VCANP13611 AL590103.1-201ENST00000434488 307 ntBASIC3.34□□□□□ -1.88
VCANP13611 AC114781.4-201ENST00000513707 639 ntBASIC3.34□□□□□ -1.88
VCANP13611 AC109329.2-201ENST00000519658 482 ntBASIC3.34□□□□□ -1.88
VCANP13611 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.34□□□□□ -1.88
VCANP13611 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.34□□□□□ -1.88
VCANP13611 AC090877.1-201ENST00000561418 344 ntBASIC3.34□□□□□ -1.88
VCANP13611 MIR4472-2-201ENST00000582069 67 ntBASIC3.34□□□□□ -1.88
VCANP13611 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.34□□□□□ -1.88
VCANP13611 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
VCANP13611 HCFC2P1-201ENST00000392864 1592 ntBASIC3.33□□□□□ -1.88
VCANP13611 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
VCANP13611 VTA1P1-201ENST00000414044 866 ntBASIC3.33□□□□□ -1.88
VCANP13611 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.33□□□□□ -1.88
VCANP13611 RNA5SP24-201ENST00000516478 95 ntBASIC3.33□□□□□ -1.88
VCANP13611 SUMO2P20-201ENST00000520803 283 ntBASIC3.33□□□□□ -1.88
VCANP13611 AC008489.1-201ENST00000524271 483 ntBASIC3.33□□□□□ -1.88
VCANP13611 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms