Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC116337.2-201ENST00000477662 156 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 RN7SL459P-201ENST00000481078 302 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 RPL23AP72-201ENST00000492447 435 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 OR4G11P-201ENST00000492842 939 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 CBX3P3-201ENST00000508108 532 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 MTCYBP43-201ENST00000513621 740 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 RN7SKP276-201ENST00000516242 268 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC008802.1-201ENST00000519121 791 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 ARL2BPP5-201ENST00000523141 481 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC022880.1-201ENST00000534017 973 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AP001880.2-201ENST00000538233 448 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 PSMB7P1-201ENST00000556349 514 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 ANKRD36BP2-206ENST00000575193 1245 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC078795.2-201ENST00000602835 1252 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC004492.1-201ENST00000607036 742 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AP001521.1-201ENST00000609150 300 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC104073.3-201ENST00000610942 955 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 AC079228.1-201ENST00000624774 1049 ntBASIC5.12□□□□□ -1.59
TDP1Q9NUW8 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TDP1Q9NUW8 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 RNA5SP88-201ENST00000365560 109 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 MIR298-201ENST00000401212 88 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 OFD1P11Y-201ENST00000418213 1177 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 LINC00993-201ENST00000420453 540 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC009965.2-201ENST00000425328 970 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 NRBF2P3-201ENST00000432731 865 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 TMX2P1-201ENST00000436507 708 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 MTND4P6-201ENST00000438297 472 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 TCEA1P3-201ENST00000443005 880 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 USP9YP10-201ENST00000454868 628 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC090013.1-201ENST00000485147 480 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 KLRA1P-201ENST00000503499 986 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 USP9YP5-201ENST00000511770 630 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 RNU6-583P-201ENST00000516012 92 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 RN7SKP96-201ENST00000516948 297 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AP000790.1-201ENST00000528891 737 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 OR5M2P-201ENST00000529003 936 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 KPNA2P3-201ENST00000584190 848 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AL596327.1-201ENST00000603629 213 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC008745.1-201ENST00000604064 271 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC239868.4-201ENST00000608318 671 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC018816.2-201ENST00000621460 353 ntBASIC5.11□□□□□ -1.59
TDP1Q9NUW8 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TDP1Q9NUW8 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms