Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AC027287.1-201ENST00000553115 1453 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 SNORA27.3-201ENST00000364937 134 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 MIR142-201ENST00000384835 87 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 MIR200C-201ENST00000384980 68 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 NUP35P2-201ENST00000416748 943 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 MTCO3P4-201ENST00000419236 787 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 OR5BE1P-201ENST00000425977 939 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 RPL7P4-203ENST00000430239 730 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 RPL7P29-201ENST00000437151 728 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AL133547.1-201ENST00000448546 220 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 HMGN2P7-201ENST00000456186 273 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 snoU13.22-201ENST00000459428 104 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AC091564.1-201ENST00000464563 479 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AC093755.1-201ENST00000512950 1023 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 SNORA70.14-201ENST00000516205 110 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 RNU6-751P-201ENST00000516382 101 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 RNU4-60P-201ENST00000517239 135 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 FAM157B-203ENST00000639350 358 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 OR5BE1P-202ENST00000641168 1176 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 MAPK10-372ENST00000641954 3413 ntBASIC4.07□□□□□ -1.76
TM9SF3Q9HD45 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC083899.2-201ENST00000423285 1376 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 OR52E6-202ENST00000379946 954 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AL590704.1-201ENST00000402856 794 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 RFESDP1-201ENST00000422350 461 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC093698.1-201ENST00000423843 571 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 PSMA2P3-201ENST00000429685 675 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AL035458.1-201ENST00000433096 585 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AL035246.1-201ENST00000433554 1255 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 GOT2P5-201ENST00000433995 546 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 RPS4XP4-201ENST00000443195 763 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 HMGB1P16-201ENST00000447155 540 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 HMGN2P21-201ENST00000447764 270 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC092685.1-201ENST00000447960 1243 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AL500522.2-201ENST00000448562 343 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 HMGB3P22-202ENST00000451823 572 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC092451.1-201ENST00000480211 153 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 RPS4XP15-201ENST00000489210 795 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AP001086.1-201ENST00000494882 321 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 BNIP3P41-201ENST00000503774 571 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC025260.1-201ENST00000548858 430 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC020914.4-201ENST00000597690 277 ntBASIC4.06□□□□□ -1.76
TM9SF3Q9HD45 AC024220.1-201ENST00000603675 484 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms