Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC116563.2-201ENST00000624751 535 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL596275.2-204ENST00000641628 552 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL596275.2-206ENST00000641957 626 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL122126.1-201ENST00000546905 1318 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 AL353743.4-201ENST00000422653 1547 ntBASIC4.16□□□□□ -1.74
CCDC3Q9BQI4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.15□□□□□ -1.74
CCDC3Q9BQI4 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.15□□□□□ -1.74
CCDC3Q9BQI4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.15□□□□□ -1.74
CCDC3Q9BQI4 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RNU6-984P-201ENST00000363236 109 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RNU6-146P-201ENST00000384602 108 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 MTCO1P56-201ENST00000401674 224 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RNU6-77P-201ENST00000410554 91 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RN7SKP182-201ENST00000410772 298 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RN7SKP33-201ENST00000410942 340 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 IPMKP1-201ENST00000425988 855 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AL162151.2-201ENST00000448875 158 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 DNAJC19P8-201ENST00000452887 259 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RNU7-140P-201ENST00000459546 60 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC022795.1-201ENST00000473808 480 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 UBE2V1P12-201ENST00000503954 474 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC096571.1-202ENST00000506634 735 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 SAP18P1-201ENST00000512058 390 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 TCP11X3P-202ENST00000514289 1254 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 MTND4LP31-201ENST00000514859 294 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RNU6-415P-201ENST00000516252 97 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC021451.1-201ENST00000523498 1129 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC068446.3-201ENST00000555285 382 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 MTND1P8-201ENST00000571424 950 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 MIR4286-201ENST00000580651 93 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RPP40P2-201ENST00000603596 712 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC073387.2-201ENST00000604797 784 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC010201.1-201ENST00000605051 540 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 RNU4-89P-201ENST00000607443 133 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AL121652.1-201ENST00000608851 448 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 AC109454.4-201ENST00000623411 649 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 BX649567.1-201ENST00000642071 1134 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 USP9YP4-201ENST00000424401 1745 ntBASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC3Q9BQI4 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 RNA5SP130-201ENST00000364431 114 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 RNA5SP513-201ENST00000364648 118 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 MIR1911-201ENST00000410783 80 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC108032.1-201ENST00000416706 207 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 RPL7P2-201ENST00000427639 268 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 RPL21P89-201ENST00000444021 467 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 TPTE2P6-202ENST00000445572 1007 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 Z95327.1-201ENST00000446082 482 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AL606517.1-201ENST00000446914 387 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC104689.1-201ENST00000473356 768 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC090013.1-201ENST00000485147 480 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC008837.1-201ENST00000511513 412 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC008494.2-201ENST00000514544 370 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC099522.1-202ENST00000514718 367 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 RNU6-276P-201ENST00000516114 96 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 NDUFS5P6-201ENST00000529136 295 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 MIR4509-3-201ENST00000578671 94 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 MIR4509-2-201ENST00000583920 94 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 MIR4760-201ENST00000585040 80 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC006130.2-201ENST00000586202 326 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC115085.1-201ENST00000588924 229 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 MIR92B-201ENST00000607575 96 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AL138721.1-201ENST00000616756 179 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 MIR4509-1-201ENST00000618224 94 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 AC018926.3-201ENST00000618841 406 ntBASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.14□□□□□ -1.75
CCDC3Q9BQI4 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms