Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC109471.1-201ENST00000511631 612 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 RNA5SP315-201ENST00000516340 116 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 RNA5SP312-201ENST00000517068 116 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AKIRIN1P1-201ENST00000547384 544 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC005951.1-201ENST00000576706 485 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 MIR3915-201ENST00000578518 97 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC008739.3-201ENST00000603262 127 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AL137072.1-201ENST00000603444 466 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AL161756.2-201ENST00000604597 246 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AL136981.2-201ENST00000617319 734 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC019206.1-201ENST00000621938 425 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC098679.5-201ENST00000624394 571 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AL022322.2-201ENST00000624072 20397 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 AC104964.3-201ENST00000606115 2860 ntBASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC5.8□□□□□ -1.48
SMC1BQ8NDV3 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AL353743.4-201ENST00000422653 1547 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC022031.1-201ENST00000585985 2593 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC008549.2-201ENST00000333482 706 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 RNU6-621P-201ENST00000364752 109 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 SNORA70.10-201ENST00000384515 134 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 PPIAP9-201ENST00000403866 498 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 PPIAP31-201ENST00000405422 495 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AL355379.1-201ENST00000405542 640 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 RNU6-272P-201ENST00000411028 104 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 RNU2-6P-201ENST00000411404 190 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AL132765.1-201ENST00000434165 553 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 RPS27AP15-201ENST00000447672 466 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 RPL12P26-201ENST00000452430 487 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 MTCO3P11-201ENST00000455103 774 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 RPL37P3-201ENST00000456825 293 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 RPS7P7-201ENST00000463499 571 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 RPL21P6-201ENST00000479171 504 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC147055.4-201ENST00000504399 745 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC005178.1-201ENST00000508392 440 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AL121766.1-201ENST00000547436 487 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC022726.1-201ENST00000587475 207 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC090425.2-201ENST00000608818 501 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC073114.1-201ENST00000612027 490 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 AC091965.5-201ENST00000624785 342 ntBASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
SMC1BQ8NDV3 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 SNORA71.3-201ENST00000362582 128 ntBASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 AL031577.2-201ENST00000404133 280 ntBASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 AL133264.1-201ENST00000407157 562 ntBASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 TIMM9P2-201ENST00000419324 266 ntBASIC5.78□□□□□ -1.48
SMC1BQ8NDV3 DNAJA1P2-201ENST00000421360 1197 ntBASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms