Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MIR208A-201ENST00000362287 71 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 MIR7-3-201ENST00000384898 110 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 RNU11-4P-201ENST00000391149 133 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 RNU2-21P-201ENST00000410368 188 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 OR8G2P-201ENST00000412796 908 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AL357078.2-201ENST00000416486 427 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AL161631.1-201ENST00000417933 486 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 VN1R42P-201ENST00000424651 344 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 OR51AB1P-201ENST00000429046 620 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 GOT2P5-201ENST00000433995 546 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 USP9YP7-201ENST00000436723 430 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 USP9YP32-201ENST00000452432 430 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 RPL7P15-201ENST00000461190 712 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 RPL23AP2-201ENST00000471227 466 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 FTH1P9-201ENST00000513251 355 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 OR8L1P-201ENST00000534005 955 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 MIR5685-201ENST00000579080 79 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AC091488.1-201ENST00000604239 660 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AL139286.1-201ENST00000604465 483 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 BNIP3P19-201ENST00000605397 577 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 FRG1HP-204ENST00000617940 757 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AL163051.2-201ENST00000618976 735 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AC004943.3-201ENST00000624116 600 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 AP003400.6-201ENST00000624698 740 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
HDDC3Q8N4P3 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC016716.1-201ENST00000265882 708 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 XIAPP3-201ENST00000312918 795 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 OR11H4-201ENST00000315409 1082 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 SNORA71.3-201ENST00000362582 128 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC069157.1-201ENST00000421749 137 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AL121882.1-201ENST00000422893 417 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 OR4F13P-201ENST00000428478 931 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 YME1L1P1-201ENST00000429435 297 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AL035246.1-201ENST00000433554 1255 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC004865.1-201ENST00000442276 1003 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AL133547.1-201ENST00000448546 220 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 RPL29P29-201ENST00000448725 423 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 DNAJC19P8-201ENST00000452887 259 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC012158.1-204ENST00000483430 465 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC104164.2-201ENST00000496953 495 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 HPRT1P2-201ENST00000505250 544 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 SNX5P1-201ENST00000505757 1041 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 IFITM8P-201ENST00000522529 394 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC007424.1-203ENST00000554613 687 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC022655.2-201ENST00000577280 318 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 RN7SL703P-201ENST00000578485 302 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC008759.1-201ENST00000589783 983 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AL671309.1-201ENST00000603750 544 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 RNA5SP108-201ENST00000605921 117 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC112503.1-201ENST00000608436 391 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AL713922.2-201ENST00000619384 716 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 AC092608.3-201ENST00000625017 386 ntBASIC4.21□□□□□ -1.74
HDDC3Q8N4P3 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms