Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RGS17P1-201ENST00000423358 553 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 RPS27AP12-201ENST00000429552 465 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 FTH1P6-201ENST00000430768 320 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 H2AFZP5-201ENST00000446960 382 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 HMGB1P16-201ENST00000447155 540 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC104651.2-201ENST00000447549 528 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 RPL7P59-201ENST00000447700 943 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 TCEA1P1-201ENST00000449716 880 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC021146.5-201ENST00000503544 545 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC010350.1-201ENST00000504908 231 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC118282.1-201ENST00000506408 765 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 Y_RNA.717-201ENST00000517106 92 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AF279873.1-201ENST00000523393 313 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 PTP4A1P6-201ENST00000531034 478 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 NMNAT1P1-201ENST00000554095 876 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 BNIP3P38-201ENST00000601117 544 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC113368.1-201ENST00000603736 382 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AL356218.2-201ENST00000605264 187 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AL353600.1-201ENST00000608148 251 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC099676.1-201ENST00000608886 657 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AL592148.2-201ENST00000612210 372 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC109454.4-201ENST00000623411 649 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 SGO1P1-201ENST00000603525 1447 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 ZNF33CP-201ENST00000432492 2030 ntBASIC3.94□□□□□ -1.78
PDLIM3Q53GG5 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 NACA3P-201ENST00000359690 648 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 RNA5SP391-201ENST00000363456 119 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 SNORA70.10-201ENST00000384515 134 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 MIR16-1-201ENST00000385271 89 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 RPL32P23-201ENST00000397237 405 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 RNU4-25P-201ENST00000410569 230 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 VDAC1P9-201ENST00000412766 841 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 OR51A3P-201ENST00000413596 924 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 CEACAMP8-201ENST00000413902 580 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 ATG4AP1-201ENST00000416893 538 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 RPL36AP36-201ENST00000418616 301 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AL513175.2-201ENST00000422071 443 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 NPM1P34-201ENST00000428821 893 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 MTATP6P17-201ENST00000431030 672 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 CR769776.1-201ENST00000441254 787 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 ARL4AP3-201ENST00000441452 574 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 TPTE2P3-201ENST00000441562 1189 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 RAB11AP1-201ENST00000442978 646 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 OR52J1P-201ENST00000450596 932 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 SNORD108-201ENST00000459332 71 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC010618.1-201ENST00000469924 477 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 RPL21P103-201ENST00000479921 488 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 HMGN2P25-201ENST00000486956 268 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC011005.3-201ENST00000491624 395 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 RN7SL558P-201ENST00000497468 299 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC110792.2-201ENST00000510278 224 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC093840.1-201ENST00000511599 336 ntBASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.93□□□□□ -1.78
PDLIM3Q53GG5 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms