Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.57□□□□□ -1.52
CUX1P39880 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CUX1P39880 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CUX1P39880 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CUX1P39880 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.56□□□□□ -1.52
CUX1P39880 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
CUX1P39880 MTND4LP20-201ENST00000402379 270 ntBASIC5.56□□□□□ -1.52
CUX1P39880 RPL5P18-201ENST00000406671 891 ntBASIC5.56□□□□□ -1.52
CUX1P39880 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC5.56□□□□□ -1.52
CUX1P39880 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CUX1P39880 USP12PY-201ENST00000427677 1064 ntBASIC5.56□□□□□ -1.52
CUX1P39880 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC5.56□□□□□ -1.52
CUX1P39880 RPS29P26-201ENST00000477483 171 ntBASIC5.56□□□□□ -1.52
CUX1P39880 AC069499.1-201ENST00000489433 509 ntBASIC5.56□□□□□ -1.52
CUX1P39880 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.56□□□□□ -1.52
CUX1P39880 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.56□□□□□ -1.52
CUX1P39880 AC011270.1-201ENST00000558606 583 ntBASIC5.56□□□□□ -1.52
CUX1P39880 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC5.56□□□□□ -1.52
CUX1P39880 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.56□□□□□ -1.52
CUX1P39880 AC079298.2-201ENST00000623885 459 ntBASIC5.56□□□□□ -1.52
CUX1P39880 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CUX1P39880 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC5.56□□□□□ -1.52
CUX1P39880 CR383658.2-201ENST00000547576 1525 ntBASIC5.56□□□□□ -1.52
CUX1P39880 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
CUX1P39880 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CUX1P39880 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC5.55□□□□□ -1.52
CUX1P39880 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
CUX1P39880 MRPS18BP2-201ENST00000434310 759 ntBASIC5.55□□□□□ -1.52
CUX1P39880 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC5.55□□□□□ -1.52
CUX1P39880 RPL7P28-201ENST00000437739 740 ntBASIC5.55□□□□□ -1.52
CUX1P39880 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC5.55□□□□□ -1.52
CUX1P39880 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC5.55□□□□□ -1.52
CUX1P39880 AL139395.1-201ENST00000603662 160 ntBASIC5.55□□□□□ -1.52
CUX1P39880 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC5.55□□□□□ -1.52
CUX1P39880 DLD-214ENST00000639772 421 ntTSL 5 BASIC5.55□□□□□ -1.52
CUX1P39880 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC5.55□□□□□ -1.52
CUX1P39880 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC5.55□□□□□ -1.52
CUX1P39880 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
CUX1P39880 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.55□□□□□ -1.52
CUX1P39880 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.55□□□□□ -1.52
CUX1P39880 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
CUX1P39880 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CUX1P39880 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
CUX1P39880 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.54□□□□□ -1.52
CUX1P39880 OR6K4P-201ENST00000423179 955 ntBASIC5.54□□□□□ -1.52
CUX1P39880 AF228730.2-201ENST00000438784 848 ntBASIC5.54□□□□□ -1.52
CUX1P39880 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CUX1P39880 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5.54□□□□□ -1.52
CUX1P39880 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC5.54□□□□□ -1.52
CUX1P39880 AC010653.1-201ENST00000571108 881 ntBASIC5.54□□□□□ -1.52
CUX1P39880 AC005242.1-201ENST00000585658 438 ntBASIC5.54□□□□□ -1.52
CUX1P39880 SNORD39.4-201ENST00000620099 78 ntBASIC5.54□□□□□ -1.52
CUX1P39880 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.54□□□□□ -1.52
CUX1P39880 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
CUX1P39880 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
CUX1P39880 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CUX1P39880 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC5.54□□□□□ -1.52
CUX1P39880 AF117829.1-206ENST00000621883 3802 ntBASIC5.54□□□□□ -1.52
CUX1P39880 AC006504.1-201ENST00000562493 3666 ntBASIC5.54□□□□□ -1.52
CUX1P39880 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CUX1P39880 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
CUX1P39880 HMGN2P8-201ENST00000391458 268 ntBASIC5.53□□□□□ -1.52
CUX1P39880 AL138885.1-201ENST00000405921 675 ntBASIC5.53□□□□□ -1.52
CUX1P39880 GNG5P5-201ENST00000420444 220 ntBASIC5.53□□□□□ -1.52
CUX1P39880 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.53□□□□□ -1.52
CUX1P39880 AC010374.2-201ENST00000512933 535 ntBASIC5.53□□□□□ -1.52
CUX1P39880 KCTD9P6-201ENST00000522306 950 ntBASIC5.53□□□□□ -1.52
CUX1P39880 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC5.53□□□□□ -1.52
CUX1P39880 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC5.53□□□□□ -1.52
CUX1P39880 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.53□□□□□ -1.52
CUX1P39880 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC5.53□□□□□ -1.52
CUX1P39880 AL162713.1-201ENST00000604480 262 ntBASIC5.53□□□□□ -1.52
CUX1P39880 AC015813.4-201ENST00000610469 179 ntBASIC5.53□□□□□ -1.52
CUX1P39880 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
CUX1P39880 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CUX1P39880 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.53□□□□□ -1.52
CUX1P39880 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
CUX1P39880 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
CUX1P39880 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
CUX1P39880 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.53□□□□□ -1.52
CUX1P39880 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
CUX1P39880 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.53□□□□□ -1.52
CUX1P39880 OR5H2-201ENST00000355273 945 ntBASIC5.53□□□□□ -1.52
CUX1P39880 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
CUX1P39880 AL356535.1-201ENST00000440335 398 ntBASIC5.53□□□□□ -1.52
CUX1P39880 PSMA2P1-201ENST00000526365 646 ntBASIC5.53□□□□□ -1.52
CUX1P39880 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.53□□□□□ -1.52
CUX1P39880 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.53□□□□□ -1.52
CUX1P39880 AC006946.3-201ENST00000609791 756 ntBASIC5.53□□□□□ -1.52
CUX1P39880 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.53□□□□□ -1.52
CUX1P39880 MIR7106-201ENST00000612419 65 ntBASIC5.53□□□□□ -1.52
CUX1P39880 AL450472.3-201ENST00000615578 367 ntBASIC5.53□□□□□ -1.52
CUX1P39880 AC233309.1-201ENST00000619522 751 ntBASIC5.53□□□□□ -1.52
CUX1P39880 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CUX1P39880 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.52□□□□□ -1.53
CUX1P39880 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
CUX1P39880 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
CUX1P39880 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CUX1P39880 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CUX1P39880 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms