Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.22□□□□□ -1.73
BRCA1P38398 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
BRCA1P38398 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.22□□□□□ -1.73
BRCA1P38398 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BRCA1P38398 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BRCA1P38398 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
BRCA1P38398 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
BRCA1P38398 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.22□□□□□ -1.73
BRCA1P38398 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
BRCA1P38398 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
BRCA1P38398 Y_RNA.62-201ENST00000362840 99 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 RNU6-249P-201ENST00000363016 102 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.22□□□□□ -1.73
BRCA1P38398 OR2X1P-201ENST00000421144 687 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.22□□□□□ -1.73
BRCA1P38398 MRPL35P4-201ENST00000453682 566 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.22□□□□□ -1.73
BRCA1P38398 AC026801.2-201ENST00000515352 425 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 TBCA-206ENST00000518338 551 ntTSL 2 BASIC4.22□□□□□ -1.73
BRCA1P38398 AP006245.1-201ENST00000522549 120 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AC018442.3-201ENST00000523025 183 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AC135001.1-201ENST00000544546 283 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.22□□□□□ -1.73
BRCA1P38398 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.22□□□□□ -1.73
BRCA1P38398 AC027281.1-201ENST00000574178 758 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.22□□□□□ -1.73
BRCA1P38398 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.22□□□□□ -1.73
BRCA1P38398 AL163642.2-201ENST00000604722 1019 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 IGHV3-29-201ENST00000604817 344 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 AL732618.1-201ENST00000623251 301 ntBASIC4.22□□□□□ -1.73
BRCA1P38398 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.22□□□□□ -1.73
BRCA1P38398 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.73
BRCA1P38398 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
BRCA1P38398 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.21□□□□□ -1.74
BRCA1P38398 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.21□□□□□ -1.74
BRCA1P38398 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BRCA1P38398 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
BRCA1P38398 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
BRCA1P38398 SNORA5B-201ENST00000363786 132 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 HIGD1AP12-201ENST00000427832 281 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 AL353705.1-201ENST00000433468 480 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
BRCA1P38398 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.21□□□□□ -1.74
BRCA1P38398 RN7SL863P-201ENST00000462370 296 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.21□□□□□ -1.74
BRCA1P38398 AC109458.1-201ENST00000508858 316 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 RFPL4AP3-201ENST00000515267 345 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.21□□□□□ -1.74
BRCA1P38398 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.21□□□□□ -1.74
BRCA1P38398 MIR3162-201ENST00000581818 82 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 KLKP1-201ENST00000595979 403 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 AP005212.4-201ENST00000614206 710 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.21□□□□□ -1.74
BRCA1P38398 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
BRCA1P38398 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.21□□□□□ -1.74
BRCA1P38398 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BRCA1P38398 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
BRCA1P38398 MTCO1P24-201ENST00000515438 1558 ntBASIC4.21□□□□□ -1.74
BRCA1P38398 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
BRCA1P38398 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.74
BRCA1P38398 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 TNPO1P3-201ENST00000436471 2662 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
BRCA1P38398 SNORA54-201ENST00000384281 123 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 MIR513A2-201ENST00000385249 127 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 MTHFD2P2-201ENST00000407725 247 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 HMGN1P24-201ENST00000412282 298 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 SETP15-201ENST00000412724 337 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC4.2□□□□□ -1.74
BRCA1P38398 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.2□□□□□ -1.74
BRCA1P38398 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.2□□□□□ -1.74
BRCA1P38398 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.2□□□□□ -1.74
BRCA1P38398 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.2□□□□□ -1.74
BRCA1P38398 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC4.2□□□□□ -1.74
BRCA1P38398 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.2□□□□□ -1.74
BRCA1P38398 HMGB1P19-201ENST00000517578 577 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 NPM1P52-201ENST00000518264 846 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC4.2□□□□□ -1.74
BRCA1P38398 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.2□□□□□ -1.74
BRCA1P38398 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC4.2□□□□□ -1.74
BRCA1P38398 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.2□□□□□ -1.74
BRCA1P38398 AC091905.1-201ENST00000624400 311 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.2□□□□□ -1.74
BRCA1P38398 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
BRCA1P38398 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.2□□□□□ -1.74
BRCA1P38398 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
BRCA1P38398 MIR449A-201ENST00000362113 91 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 RNA5SP42-201ENST00000364278 115 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 RNU6-7-201ENST00000364784 107 ntBASIC4.2□□□□□ -1.74
BRCA1P38398 RNU6-8-201ENST00000365467 107 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 132.1 ms