Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 PCAT14-202ENST00000627127 3935 ntBASIC6.32□□□□□ -1.4
LIG1P18858 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIG1P18858 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
LIG1P18858 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.32□□□□□ -1.4
LIG1P18858 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIG1P18858 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
LIG1P18858 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIG1P18858 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIG1P18858 RNU4-44P-201ENST00000363050 141 ntBASIC6.32□□□□□ -1.4
LIG1P18858 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG1P18858 RNU6-780P-201ENST00000391030 104 ntBASIC6.32□□□□□ -1.4
LIG1P18858 RPS3AP3-201ENST00000411933 242 ntBASIC6.32□□□□□ -1.4
LIG1P18858 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG1P18858 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG1P18858 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG1P18858 BMS1P19-201ENST00000433925 393 ntBASIC6.32□□□□□ -1.4
LIG1P18858 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG1P18858 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG1P18858 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.32□□□□□ -1.4
LIG1P18858 RABEPKP1-201ENST00000440529 1026 ntBASIC6.32□□□□□ -1.4
LIG1P18858 RPL7P48-201ENST00000461513 746 ntBASIC6.32□□□□□ -1.4
LIG1P18858 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.32□□□□□ -1.4
LIG1P18858 RN7SL583P-201ENST00000475692 287 ntBASIC6.32□□□□□ -1.4
LIG1P18858 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG1P18858 RNU6-885P-201ENST00000516607 104 ntBASIC6.32□□□□□ -1.4
LIG1P18858 AC022878.1-201ENST00000530684 149 ntBASIC6.32□□□□□ -1.4
LIG1P18858 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG1P18858 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
LIG1P18858 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
LIG1P18858 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
LIG1P18858 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG1P18858 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.32□□□□□ -1.4
LIG1P18858 AC010338.1-201ENST00000621823 717 ntBASIC6.32□□□□□ -1.4
LIG1P18858 FRG1KP-201ENST00000623592 341 ntBASIC6.32□□□□□ -1.4
LIG1P18858 MIR1321-201ENST00000637766 79 ntBASIC6.32□□□□□ -1.4
LIG1P18858 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIG1P18858 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.32□□□□□ -1.4
LIG1P18858 AC046144.1-201ENST00000478559 1853 ntBASIC6.32□□□□□ -1.4
LIG1P18858 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIG1P18858 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG1P18858 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC6.32□□□□□ -1.4
LIG1P18858 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 AL022311.1-201ENST00000623726 19416 ntBASIC6.31□□□□□ -1.4
LIG1P18858 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
LIG1P18858 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.31□□□□□ -1.4
LIG1P18858 RNU6-582P-201ENST00000362989 107 ntBASIC6.31□□□□□ -1.4
LIG1P18858 RNU6-492P-201ENST00000363035 104 ntBASIC6.31□□□□□ -1.4
LIG1P18858 RNU6-216P-201ENST00000363282 104 ntBASIC6.31□□□□□ -1.4
LIG1P18858 RNA5SP242-201ENST00000364171 118 ntBASIC6.31□□□□□ -1.4
LIG1P18858 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG1P18858 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
LIG1P18858 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG1P18858 TMBIM7P-201ENST00000418074 855 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AL953862.1-201ENST00000423016 168 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AC007161.1-204ENST00000423039 460 ntBASIC6.31□□□□□ -1.4
LIG1P18858 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIG1P18858 MTCO1P20-201ENST00000425366 358 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG1P18858 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG1P18858 AC104850.1-201ENST00000435940 476 ntBASIC6.31□□□□□ -1.4
LIG1P18858 RPL7P11-201ENST00000437586 658 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6.31□□□□□ -1.4
LIG1P18858 PGBD4P3-201ENST00000440731 581 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG1P18858 AC093019.1-201ENST00000443135 252 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG1P18858 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG1P18858 AC096741.1-201ENST00000472250 846 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AC021678.1-201ENST00000505195 936 ntBASIC6.31□□□□□ -1.4
LIG1P18858 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG1P18858 AC114786.4-201ENST00000508771 728 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AF131216.2-201ENST00000512316 564 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.31□□□□□ -1.4
LIG1P18858 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC6.31□□□□□ -1.4
LIG1P18858 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG1P18858 LRRC34P2-201ENST00000514850 553 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG1P18858 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG1P18858 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC6.31□□□□□ -1.4
LIG1P18858 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.31□□□□□ -1.4
LIG1P18858 AL442663.2-201ENST00000554385 511 ntBASIC6.31□□□□□ -1.4
LIG1P18858 SNORD95-201ENST00000579879 68 ntBASIC6.31□□□□□ -1.4
LIG1P18858 MIR7853-201ENST00000584820 132 ntBASIC6.31□□□□□ -1.4
LIG1P18858 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC6.31□□□□□ -1.4
LIG1P18858 SUGT1P3-202ENST00000604259 383 ntBASIC6.31□□□□□ -1.4
LIG1P18858 MIR6862-1-201ENST00000613016 70 ntBASIC6.31□□□□□ -1.4
LIG1P18858 MIR6862-2-201ENST00000614755 70 ntBASIC6.31□□□□□ -1.4
LIG1P18858 MLECP1-201ENST00000615893 709 ntBASIC6.31□□□□□ -1.4
LIG1P18858 AC243756.2-201ENST00000618406 463 ntBASIC6.31□□□□□ -1.4
LIG1P18858 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 317.9 ms