Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC138907.10-201ENST00000623708 983 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 MIR30B-201ENST00000384850 88 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 PGBD4P8-201ENST00000412993 562 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 GNG5P5-201ENST00000420444 220 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 TCEA1P2-201ENST00000420496 906 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC073310.1-201ENST00000423226 1033 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 RPS26P47-201ENST00000427219 348 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 RPL7P29-201ENST00000437151 728 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AL589765.3-201ENST00000446084 462 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC008379.1-201ENST00000463655 464 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC106707.2-201ENST00000484182 374 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC008759.1-201ENST00000589783 983 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC016542.1-201ENST00000608259 493 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AL109620.1-201ENST00000618738 1197 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 METTL8-219ENST00000640734 726 ntTSL 2 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 MFSD8-213ENST00000641134 1327 ntBASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 AC008155.2-201ENST00000464337 397 ntBASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 RN7SKP83-201ENST00000516512 178 ntBASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 AC007599.1-201ENST00000568688 1174 ntBASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 ELOCP35-201ENST00000604289 336 ntBASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 SNORD91B-202ENST00000608459 222 ntBASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 AC112503.2-201ENST00000609005 552 ntBASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 U6.48-201ENST00000618523 106 ntBASIC7.54□□□□□ -1.2
SHROOM4Q9ULL8 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 MTCO1P12-201ENST00000414273 1543 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 AL592494.2-201ENST00000425455 1548 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 RNU1-15P-201ENST00000353977 144 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 RNA5SP27-201ENST00000363839 119 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 MTND4P11-201ENST00000417020 1058 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 RBMY1KP-201ENST00000423480 476 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 RPL23AP89-201ENST00000439324 255 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 PPIAP15-201ENST00000479662 484 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 AC104629.1-201ENST00000494226 508 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 AC008694.2-201ENST00000517591 306 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 RPL21P7-201ENST00000557463 483 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 AC079171.1-201ENST00000568788 914 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 MIR432-201ENST00000606207 94 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 AC132825.7-201ENST00000638744 335 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 AL451142.2-201ENST00000429076 2090 ntBASIC7.53□□□□□ -1.2
SHROOM4Q9ULL8 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
SHROOM4Q9ULL8 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
SHROOM4Q9ULL8 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 SNORA63.3-201ENST00000362682 132 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 PEX12P1-201ENST00000400284 1048 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 HMGB3P31-201ENST00000413333 595 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 MTCO2P1-201ENST00000424648 477 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AL035407.2-201ENST00000454090 378 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 RPL32P14-201ENST00000463196 378 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AC005726.1-201ENST00000494679 427 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AC009852.2-201ENST00000567898 485 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 MIR3936-201ENST00000584304 110 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AC018926.1-201ENST00000616335 435 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AL138960.2-201ENST00000625145 535 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 AL450326.2-201ENST00000421913 1962 ntBASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
SHROOM4Q9ULL8 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
SHROOM4Q9ULL8 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms