Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AP001642.1-201ENST00000624727 2117 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 OR13C1P-202ENST00000641378 2919 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 AC107021.2-201ENST00000567714 2095 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 RARSP1-201ENST00000542842 1418 ntBASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
CCDC39Q9UFE4 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC020633.1-201ENST00000468439 2247 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC100757.1-201ENST00000616872 1835 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.58-201ENST00000362807 102 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.154-201ENST00000363624 102 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 RNA5SP27-201ENST00000363839 119 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.311-201ENST00000365068 96 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 RNY3P1-201ENST00000365085 102 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 RNY3-201ENST00000365484 102 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 IARS-201ENST00000375627 697 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.490-201ENST00000384413 102 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 SNORD56.6-201ENST00000384569 71 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 HMGB3P31-201ENST00000413333 595 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 BTF3P9-201ENST00000418784 283 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC093155.2-201ENST00000420734 937 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC093084.1-201ENST00000424233 687 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 NANOGP4-201ENST00000427230 913 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 RPL34P6-201ENST00000432390 345 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 MTND3P2-201ENST00000438452 342 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 RNA5SP103-201ENST00000459503 118 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 RN7SL583P-201ENST00000475692 287 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 SNORA31.13-201ENST00000516624 135 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 CDC42P3-201ENST00000518493 633 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC100784.1-201ENST00000522790 310 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 OR5AN2P-201ENST00000534535 896 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC006349.1-201ENST00000555526 235 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AL161729.4-201ENST00000604650 476 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AL035413.2-201ENST00000604801 525 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC004817.4-201ENST00000602396 3625 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC100778.3-201ENST00000580060 1750 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 ZNF652P1-201ENST00000442420 1309 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 AC008079.2-201ENST00000623543 20396 ntBASIC6.23□□□□□ -1.41
CCDC39Q9UFE4 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 MTCO1P7-201ENST00000419523 1542 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 Y_RNA.132-201ENST00000363421 102 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 SNORA63C-201ENST00000364578 129 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 RNU6-621P-201ENST00000364752 109 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 RN7SKP6-201ENST00000364795 319 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 MTCYBP36-201ENST00000404146 440 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 RPSAP35-201ENST00000413753 818 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 RPS3AP9-201ENST00000417027 792 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AL133173.1-201ENST00000423458 397 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 SAR1AP4-201ENST00000429225 591 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 GPM6BP2-201ENST00000432046 144 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 CLUHP1-201ENST00000435012 1190 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 RPS25P9-201ENST00000435591 252 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 GPM6BP1-201ENST00000446387 144 ntBASIC6.22□□□□□ -1.41
CCDC39Q9UFE4 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms