Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 RNU6-1339P-201ENST00000363574 91 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 SNORD66.1-201ENST00000391230 76 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AC073508.1-201ENST00000428866 656 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AC018644.1-201ENST00000429934 551 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 RPL23AP46-201ENST00000438548 490 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 RNFT1P2-201ENST00000443064 757 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 RPS27AP15-201ENST00000447672 466 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AC233982.1-201ENST00000451247 436 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 SNRPGP5-201ENST00000456003 220 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 snoU13.24-201ENST00000458998 104 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 RN7SKP277-201ENST00000516895 283 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 ATP5F1P7-201ENST00000567330 760 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AL606490.9-201ENST00000603331 271 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AC004825.2-201ENST00000616634 455 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AC073569.3-201ENST00000619055 682 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 CR392039.5-201ENST00000623201 510 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 AC106871.1-201ENST00000568324 3102 ntBASIC4.24□□□□□ -1.73
HDDC3Q8N4P3 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AL512646.1-201ENST00000269395 1077 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 MIR449B-201ENST00000384995 97 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AL590704.1-201ENST00000402856 794 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC073310.1-201ENST00000423226 1033 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 RPL7P4-203ENST00000430239 730 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 RPL23AP15-201ENST00000450202 459 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 BX276092.4-201ENST00000452056 248 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC126121.1-201ENST00000482313 553 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 STMN1P2-201ENST00000508435 439 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC006499.6-201ENST00000511169 607 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC018797.3-201ENST00000513388 1241 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC090151.1-201ENST00000520784 730 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 MTND2P26-201ENST00000528255 1029 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 SLC25A36P1-201ENST00000590111 465 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 ZNF92P2-201ENST00000600543 1059 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 RMST_10.1-201ENST00000616309 154 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC121761.2-201ENST00000617300 689 ntBASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HDDC3Q8N4P3 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 Z82217.1-201ENST00000625157 8149 ntBASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HDDC3Q8N4P3 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms