Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AC124068.1-201ENST00000563131 678 ntBASIC4.27□□□□□ -1.73
MSH3P20585 CYP4A43P-201ENST00000568156 121 ntBASIC4.27□□□□□ -1.73
MSH3P20585 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.27□□□□□ -1.73
MSH3P20585 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.27□□□□□ -1.73
MSH3P20585 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 PSMA6P4-201ENST00000603247 718 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AL354984.3-201ENST00000604803 325 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AC009464.1-201ENST00000615731 469 ntBASIC4.27□□□□□ -1.73
MSH3P20585 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
MSH3P20585 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 AC019278.1-201ENST00000623516 479 ntBASIC4.27□□□□□ -1.73
MSH3P20585 AC011944.2-201ENST00000624440 683 ntBASIC4.27□□□□□ -1.73
MSH3P20585 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSH3P20585 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
MSH3P20585 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
MSH3P20585 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH3P20585 AC099786.3-201ENST00000565735 1410 ntBASIC4.27□□□□□ -1.73
MSH3P20585 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
MSH3P20585 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 AL158163.1-201ENST00000603915 1649 ntBASIC4.26□□□□□ -1.73
MSH3P20585 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 RNU4-51P-201ENST00000364206 140 ntBASIC4.26□□□□□ -1.73
MSH3P20585 RNU4-25P-201ENST00000410569 230 ntBASIC4.26□□□□□ -1.73
MSH3P20585 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.26□□□□□ -1.73
MSH3P20585 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 P2RY10P2-201ENST00000416730 913 ntBASIC4.26□□□□□ -1.73
MSH3P20585 VPS26BP1-201ENST00000417155 755 ntBASIC4.26□□□□□ -1.73
MSH3P20585 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC4.26□□□□□ -1.73
MSH3P20585 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 AC016712.1-201ENST00000431088 378 ntBASIC4.26□□□□□ -1.73
MSH3P20585 PRELID3BP10-201ENST00000431957 584 ntBASIC4.26□□□□□ -1.73
MSH3P20585 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 ACTR3P2-201ENST00000439585 1257 ntBASIC4.26□□□□□ -1.73
MSH3P20585 AC068135.1-201ENST00000446164 246 ntBASIC4.26□□□□□ -1.73
MSH3P20585 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 AC009220.1-201ENST00000451614 275 ntBASIC4.26□□□□□ -1.73
MSH3P20585 NDUFA5P9-201ENST00000472609 340 ntBASIC4.26□□□□□ -1.73
MSH3P20585 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 AC025445.1-201ENST00000502728 300 ntBASIC4.26□□□□□ -1.73
MSH3P20585 PARP4P3-201ENST00000510265 317 ntBASIC4.26□□□□□ -1.73
MSH3P20585 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC4.26□□□□□ -1.73
MSH3P20585 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 AC090819.1-201ENST00000523800 1111 ntBASIC4.26□□□□□ -1.73
MSH3P20585 OR5M7P-201ENST00000526140 972 ntBASIC4.26□□□□□ -1.73
MSH3P20585 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 AP002812.4-201ENST00000532139 286 ntBASIC4.26□□□□□ -1.73
MSH3P20585 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 AC068446.3-201ENST00000555285 382 ntBASIC4.26□□□□□ -1.73
MSH3P20585 PSMB7P1-201ENST00000556349 514 ntBASIC4.26□□□□□ -1.73
MSH3P20585 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 AC023824.3-201ENST00000569003 562 ntBASIC4.26□□□□□ -1.73
MSH3P20585 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 ELOCP28-201ENST00000590044 317 ntBASIC4.26□□□□□ -1.73
MSH3P20585 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.26□□□□□ -1.73
MSH3P20585 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.26□□□□□ -1.73
MSH3P20585 Z99289.3-201ENST00000605586 594 ntBASIC4.26□□□□□ -1.73
MSH3P20585 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH3P20585 AC010975.3-201ENST00000618727 978 ntBASIC4.26□□□□□ -1.73
MSH3P20585 AL121895.2-201ENST00000619558 447 ntBASIC4.26□□□□□ -1.73
MSH3P20585 BX649567.1-201ENST00000642071 1134 ntBASIC4.26□□□□□ -1.73
MSH3P20585 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
MSH3P20585 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
MSH3P20585 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.26□□□□□ -1.73
MSH3P20585 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.26□□□□□ -1.73
MSH3P20585 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
MSH3P20585 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.25□□□□□ -1.73
MSH3P20585 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.25□□□□□ -1.73
MSH3P20585 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.25□□□□□ -1.73
MSH3P20585 RNU4-68P-201ENST00000364314 141 ntBASIC4.25□□□□□ -1.73
MSH3P20585 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC4.25□□□□□ -1.73
MSH3P20585 RNU6-224P-201ENST00000384055 107 ntBASIC4.25□□□□□ -1.73
MSH3P20585 MIR513B-201ENST00000385136 84 ntBASIC4.25□□□□□ -1.73
MSH3P20585 Y_RNA.578-201ENST00000390903 88 ntBASIC4.25□□□□□ -1.73
MSH3P20585 SNORD66.1-201ENST00000391230 76 ntBASIC4.25□□□□□ -1.73
MSH3P20585 Y_RNA.625-201ENST00000411256 107 ntBASIC4.25□□□□□ -1.73
MSH3P20585 AC092745.2-202ENST00000411880 369 ntBASIC4.25□□□□□ -1.73
MSH3P20585 BTF3P8-201ENST00000414577 526 ntBASIC4.25□□□□□ -1.73
MSH3P20585 AL161631.1-201ENST00000417933 486 ntBASIC4.25□□□□□ -1.73
MSH3P20585 MFSD13B-201ENST00000420133 1290 ntBASIC4.25□□□□□ -1.73
MSH3P20585 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.25□□□□□ -1.73
MSH3P20585 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC4.25□□□□□ -1.73
MSH3P20585 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC4.25□□□□□ -1.73
MSH3P20585 HLA-N-201ENST00000437516 135 ntBASIC4.25□□□□□ -1.73
MSH3P20585 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms