Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.75□□□□□ -1.81
SDC1P18827 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SDC1P18827 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SDC1P18827 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SDC1P18827 AL592494.2-201ENST00000425455 1548 ntBASIC3.75□□□□□ -1.81
SDC1P18827 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.75□□□□□ -1.81
SDC1P18827 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SDC1P18827 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC1P18827 AC104446.1-201ENST00000613728 1321 ntBASIC3.74□□□□□ -1.81
SDC1P18827 SEC63P2-201ENST00000503863 1939 ntBASIC3.74□□□□□ -1.81
SDC1P18827 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
SDC1P18827 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC1P18827 RNA5SP130-201ENST00000364431 114 ntBASIC3.74□□□□□ -1.81
SDC1P18827 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
SDC1P18827 RNU6-354P-201ENST00000383862 107 ntBASIC3.74□□□□□ -1.81
SDC1P18827 RNU6-610P-201ENST00000384264 107 ntBASIC3.74□□□□□ -1.81
SDC1P18827 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC1P18827 AC092745.2-202ENST00000411880 369 ntBASIC3.74□□□□□ -1.81
SDC1P18827 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.74□□□□□ -1.81
SDC1P18827 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC3.74□□□□□ -1.81
SDC1P18827 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 RPS7P5-201ENST00000441482 581 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 HMGB1P16-201ENST00000447155 540 ntBASIC3.74□□□□□ -1.81
SDC1P18827 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC1P18827 NUTF2P3-201ENST00000448540 384 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AL096803.2-201ENST00000450032 677 ntBASIC3.74□□□□□ -1.81
SDC1P18827 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC1P18827 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SDC1P18827 RPL37P3-201ENST00000456825 293 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AC104629.1-201ENST00000494226 508 ntBASIC3.74□□□□□ -1.81
SDC1P18827 NAMPTP2-201ENST00000505629 1115 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.74□□□□□ -1.81
SDC1P18827 MTCO3P27-201ENST00000514397 196 ntBASIC3.74□□□□□ -1.81
SDC1P18827 RNA5SP143-201ENST00000516936 115 ntBASIC3.74□□□□□ -1.81
SDC1P18827 C1GALT1P3-201ENST00000522049 819 ntBASIC3.74□□□□□ -1.81
SDC1P18827 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 AC139103.1-201ENST00000534696 1030 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AC107016.1-201ENST00000550463 337 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 OR4U1P-201ENST00000554958 912 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.74□□□□□ -1.81
SDC1P18827 ATP5F1P7-201ENST00000567330 760 ntBASIC3.74□□□□□ -1.81
SDC1P18827 KPNA2P3-201ENST00000584190 848 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AC091167.4-201ENST00000605079 184 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AC017076.1-201ENST00000607613 578 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.74□□□□□ -1.81
SDC1P18827 AC016717.3-201ENST00000624730 554 ntBASIC3.74□□□□□ -1.81
SDC1P18827 AC080188.3-201ENST00000624842 748 ntBASIC3.74□□□□□ -1.81
SDC1P18827 CDRT1-208ENST00000630868 794 ntBASIC3.74□□□□□ -1.81
SDC1P18827 OR52H1-202ENST00000641796 1061 ntBASIC3.74□□□□□ -1.81
SDC1P18827 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
SDC1P18827 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SDC1P18827 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC1P18827 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SDC1P18827 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC1P18827 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
SDC1P18827 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC1P18827 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC1P18827 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC1P18827 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC1P18827 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC1P18827 RPS26P30-201ENST00000443431 335 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC1P18827 AL133477.1-201ENST00000457472 514 ntBASIC3.73□□□□□ -1.81
SDC1P18827 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC1P18827 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AC106872.2-201ENST00000494303 480 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SDC1P18827 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 SNORD116-26-201ENST00000516006 96 ntBASIC3.73□□□□□ -1.81
SDC1P18827 RNA5SP179-201ENST00000517284 121 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.73□□□□□ -1.81
SDC1P18827 AC008562.1-201ENST00000521763 330 ntBASIC3.73□□□□□ -1.81
SDC1P18827 COX6B1P6-201ENST00000522347 255 ntBASIC3.73□□□□□ -1.81
SDC1P18827 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC3.73□□□□□ -1.81
SDC1P18827 AC090877.1-201ENST00000561418 344 ntBASIC3.73□□□□□ -1.81
SDC1P18827 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.73□□□□□ -1.81
SDC1P18827 AC023575.1-201ENST00000580510 358 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms