Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
COL6A3P12111 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A3P12111 PRELID3BP10-201ENST00000431957 584 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 AC112198.1-201ENST00000505369 1220 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 RNA5SP458-201ENST00000516188 119 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 AC234782.5-201ENST00000617723 324 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.46□□□□□ -1.86
COL6A3P12111 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A3P12111 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.46□□□□□ -1.86
COL6A3P12111 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A3P12111 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
COL6A3P12111 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC3.46□□□□□ -1.86
COL6A3P12111 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.46□□□□□ -1.86
COL6A3P12111 AC005332.5-201ENST00000591222 2919 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A3P12111 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A3P12111 Y_RNA.355-201ENST00000365462 98 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 AC009963.1-201ENST00000417265 157 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 AC027281.1-201ENST00000574178 758 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 UBL5P2-201ENST00000583788 219 ntBASIC3.46□□□□□ -1.86
COL6A3P12111 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.46□□□□□ -1.86
COL6A3P12111 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL6A3P12111 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.46□□□□□ -1.86
COL6A3P12111 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.46□□□□□ -1.86
COL6A3P12111 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.45□□□□□ -1.86
COL6A3P12111 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.45□□□□□ -1.86
COL6A3P12111 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.45□□□□□ -1.86
COL6A3P12111 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.45□□□□□ -1.86
COL6A3P12111 AC009977.1-201ENST00000586015 570 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 AC063923.1-201ENST00000478982 1619 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.45□□□□□ -1.86
COL6A3P12111 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.45□□□□□ -1.86
COL6A3P12111 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 RNU1-70P-201ENST00000362618 164 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 RSL24D1P1-201ENST00000404972 493 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.45□□□□□ -1.86
COL6A3P12111 RPL31P61-201ENST00000496160 376 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 RNU6-579P-201ENST00000516879 102 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC3.45□□□□□ -1.86
COL6A3P12111 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.45□□□□□ -1.86
COL6A3P12111 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC3.45□□□□□ -1.86
COL6A3P12111 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.45□□□□□ -1.86
COL6A3P12111 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL6A3P12111 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.45□□□□□ -1.86
COL6A3P12111 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL6A3P12111 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.45□□□□□ -1.86
COL6A3P12111 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL6A3P12111 RPS3AP26-201ENST00000398259 784 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 U3.39-201ENST00000408569 239 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.45□□□□□ -1.86
COL6A3P12111 AC048351.1-201ENST00000420064 602 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.45□□□□□ -1.86
COL6A3P12111 NDUFB1P1-201ENST00000435191 180 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 AC010468.1-201ENST00000461022 817 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 AC114781.4-201ENST00000513707 639 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 RNA5SP24-201ENST00000516478 95 ntBASIC3.45□□□□□ -1.86
COL6A3P12111 AC092435.4-201ENST00000623012 4159 ntBASIC3.44□□□□□ -1.86
COL6A3P12111 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL6A3P12111 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC3.44□□□□□ -1.86
COL6A3P12111 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
COL6A3P12111 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC3.44□□□□□ -1.86
COL6A3P12111 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
COL6A3P12111 AL356057.1-202ENST00000402263 756 ntBASIC3.44□□□□□ -1.86
COL6A3P12111 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.44□□□□□ -1.86
COL6A3P12111 MIR2682-201ENST00000580305 110 ntBASIC3.44□□□□□ -1.86
COL6A3P12111 AC010503.3-201ENST00000594355 540 ntBASIC3.44□□□□□ -1.86
COL6A3P12111 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC3.44□□□□□ -1.86
COL6A3P12111 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL6A3P12111 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC3.44□□□□□ -1.86
COL6A3P12111 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
COL6A3P12111 SNORA7.4-201ENST00000384249 137 ntBASIC3.44□□□□□ -1.86
COL6A3P12111 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC3.44□□□□□ -1.86
COL6A3P12111 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.44□□□□□ -1.86
COL6A3P12111 AC018552.3-201ENST00000567416 561 ntBASIC3.44□□□□□ -1.86
COL6A3P12111 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.44□□□□□ -1.86
COL6A3P12111 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.44□□□□□ -1.86
COL6A3P12111 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL6A3P12111 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL6A3P12111 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL6A3P12111 Y_RNA.269-201ENST00000364685 89 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 RNA5SP508-201ENST00000411327 119 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 DPPA2P2-201ENST00000418220 897 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 AC073335.1-201ENST00000427776 363 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC3.43□□□□□ -1.86
COL6A3P12111 FCF1P8-201ENST00000510322 597 ntBASIC3.43□□□□□ -1.86
COL6A3P12111 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms