Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 SNORD35B-201ENST00000363660 87 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 RNA5SP399-201ENST00000364003 117 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 OR4F13P-201ENST00000428478 931 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 RPS29P2-201ENST00000479278 136 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AC121161.1-201ENST00000510606 652 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 SCARNA14-201ENST00000516903 136 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AC015726.1-201ENST00000602353 681 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AC005014.3-201ENST00000605985 190 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AC026979.4-201ENST00000606555 645 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AC243654.2-201ENST00000612843 443 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 MTCO1P18-201ENST00000455518 1419 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 AL445437.1-201ENST00000623157 3087 ntBASIC7.58□□□□□ -1.2
SHROOM4Q9ULL8 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 RNU6-1005P-201ENST00000384519 107 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 SNORA68.2-201ENST00000391263 128 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 VN1R8P-201ENST00000407739 893 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 VTA1P1-201ENST00000414044 866 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 NPM1P24-201ENST00000428039 894 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 SKP1P3-201ENST00000429280 487 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 RPL29P14-201ENST00000495837 428 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AC093853.1-201ENST00000515689 483 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 MTND1P6-201ENST00000523621 946 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AC100770.1-201ENST00000532310 322 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 CSNK1A1P1-202ENST00000563423 981 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AC025627.2-201ENST00000576220 160 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 SMCR2_2.1-201ENST00000619783 161 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AP004289.2-201ENST00000444413 1457 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 AC021242.1-201ENST00000507315 2035 ntBASIC7.57□□□□□ -1.2
SHROOM4Q9ULL8 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 RNA5SP267-201ENST00000364893 126 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 VDAC1P9-201ENST00000412766 841 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 RPS29P4-201ENST00000414733 161 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AL590609.2-201ENST00000421430 368 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC004448.2-201ENST00000422360 586 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AL158156.1-201ENST00000422509 473 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC009965.2-201ENST00000425328 970 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC093422.3-201ENST00000428506 305 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 NDUFA5P2-201ENST00000519723 344 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC091516.1-201ENST00000549191 703 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC106734.1-201ENST00000568646 663 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC124283.4-201ENST00000581815 456 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 RNF6P1-201ENST00000444889 1784 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 AC005332.5-201ENST00000591222 2919 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 PHKBP1-201ENST00000450951 1951 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 PRO1804-201ENST00000623780 2050 ntBASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
SHROOM4Q9ULL8 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AL158825.1-201ENST00000414735 521 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 RPS23P10-201ENST00000416185 486 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC073335.1-201ENST00000427776 363 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AL512637.2-201ENST00000431287 1256 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC104306.1-201ENST00000449702 371 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 RNA5SP103-201ENST00000459503 118 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC012158.1-204ENST00000483430 465 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 OR5H3P-201ENST00000502817 919 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 RNU6-334P-201ENST00000517072 102 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 RNA5SP179-201ENST00000517284 121 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 C1DP5-201ENST00000525775 383 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 TMF1P1-201ENST00000576058 373 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC091167.4-201ENST00000605079 184 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AC026741.1-201ENST00000605892 482 ntBASIC7.55□□□□□ -1.2
SHROOM4Q9ULL8 AL355816.1-201ENST00000607951 118 ntBASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms