Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.55□□□□□ -1.68
PRPF39Q86UA1 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC067945.1-201ENST00000342609 618 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 RN7SKP227-201ENST00000364445 330 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 RNA5SP22-201ENST00000365393 109 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 RNU1-44P-201ENST00000384453 163 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 VN1R8P-201ENST00000407739 893 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 RPL31P45-201ENST00000419532 356 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 OR4F13P-201ENST00000428478 931 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 SKP1P3-201ENST00000429280 487 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 BX276092.4-201ENST00000452056 248 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC010618.1-201ENST00000469924 477 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC087385.1-201ENST00000475062 312 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 HMGB1P38-201ENST00000490557 577 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 RN7SL810P-201ENST00000493031 276 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC008694.2-201ENST00000517591 306 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC104417.1-201ENST00000523974 751 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 KPNA2P3-201ENST00000584190 848 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AL160290.3-201ENST00000604869 165 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC020634.1-201ENST00000608701 549 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 OR6R2P-201ENST00000609216 300 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC105429.2-201ENST00000610567 517 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AC067852.7-201ENST00000623270 535 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 EIF2AP4-201ENST00000424793 1781 ntBASIC4.54□□□□□ -1.68
PRPF39Q86UA1 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PRPF39Q86UA1 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 RNA5SP52-201ENST00000362448 134 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 RPS24P12-201ENST00000402084 394 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AL121834.1-202ENST00000404494 277 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 BTBD10P2-201ENST00000404779 676 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AL160275.2-201ENST00000412010 394 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 OR51AB1P-201ENST00000429046 620 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 RPS29P17-201ENST00000430795 166 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 RPEP2-201ENST00000432149 701 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 CBX1P1-201ENST00000440184 427 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AL672167.3-201ENST00000465951 960 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 RN7SL303P-201ENST00000469773 251 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AP001207.1-201ENST00000524051 481 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 CENPUP2-201ENST00000555897 1186 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AL020997.3-201ENST00000602843 359 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 RPAP2P1-201ENST00000603626 1168 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AL136370.1-201ENST00000608166 691 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AC015813.4-201ENST00000610469 179 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AL136964.1-201ENST00000622038 2990 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 AC013437.2-201ENST00000639587 677 ntBASIC4.53□□□□□ -1.68
PRPF39Q86UA1 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
PRPF39Q86UA1 MTND5P28-201ENST00000438005 1594 ntBASIC4.53□□□□□ -1.69
PRPF39Q86UA1 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.52□□□□□ -1.69
PRPF39Q86UA1 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PRPF39Q86UA1 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 180.3 ms