Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AC093719.1-202ENST00000392735 373 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AL445213.1-201ENST00000412589 747 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 MTND2P11-201ENST00000423638 648 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 RPS4XP2-201ENST00000458402 793 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 FTH1P24-201ENST00000503502 462 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AC026801.2-201ENST00000515352 425 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 NCAPGP2-201ENST00000557911 754 ntBASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CCDC88AQ3V6T2 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 AC017079.2-201ENST00000416102 485 ntBASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 TRBV12-2-201ENST00000489763 344 ntBASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 HNRNPKP5-201ENST00000515300 253 ntBASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 CR383656.14-201ENST00000551951 406 ntBASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 AC022149.2-201ENST00000621061 203 ntBASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC88AQ3V6T2 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC88AQ3V6T2 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC88AQ3V6T2 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
CCDC88AQ3V6T2 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC88AQ3V6T2 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AC004552.1-201ENST00000419089 348 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 CCRL1P1-201ENST00000449542 1053 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 RPS26P3-201ENST00000470205 348 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AC090543.2-201ENST00000483963 348 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AC004057.1-201ENST00000485827 348 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 LARP7P3-201ENST00000579888 337 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AL713922.2-201ENST00000619384 716 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AC103858.2-201ENST00000621471 543 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 AC127502.3-201ENST00000636170 1206 ntBASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC88AQ3V6T2 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 RNA5SP42-201ENST00000364278 115 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AL136131.1-201ENST00000406079 803 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 JKAMPP1-201ENST00000413804 919 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 RPL21P109-201ENST00000422213 475 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 SDCBPP2-201ENST00000424643 885 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 RPS15AP29-201ENST00000445539 400 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 KC877373.1-201ENST00000479066 408 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 ATP5A1P2-202ENST00000616464 443 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC018555.1-201ENST00000567548 1980 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC233263.6-201ENST00000631132 1963 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC093908.1-201ENST00000623125 8092 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 COTL1P1-201ENST00000422309 375 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 PTGES3P3-201ENST00000511479 482 ntBASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC88AQ3V6T2 AL359757.2-201ENST00000624309 274 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms