Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CHD3Q12873 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.26□□□□□ -1.89
CHD3Q12873 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.26□□□□□ -1.89
CHD3Q12873 PRO1804-201ENST00000623780 2050 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CHD3Q12873 AC092111.2-201ENST00000611627 1414 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 RNA5SP267-201ENST00000364893 126 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
CHD3Q12873 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.26□□□□□ -1.89
CHD3Q12873 TRGV5P-201ENST00000419915 354 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC3.26□□□□□ -1.89
CHD3Q12873 RPL21P10-201ENST00000463521 490 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 RPS29P2-201ENST00000479278 136 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 AC104619.4-201ENST00000510773 249 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 RNA5SP164-201ENST00000516533 110 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 IGHV3-32-201ENST00000519182 355 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.26□□□□□ -1.89
CHD3Q12873 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.26□□□□□ -1.89
CHD3Q12873 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.26□□□□□ -1.89
CHD3Q12873 CD24P2-201ENST00000565486 219 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 AC073530.2-201ENST00000623987 261 ntBASIC3.26□□□□□ -1.89
CHD3Q12873 AL445437.1-201ENST00000623157 3087 ntBASIC3.25□□□□□ -1.89
CHD3Q12873 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.25□□□□□ -1.89
CHD3Q12873 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CHD3Q12873 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
CHD3Q12873 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.25□□□□□ -1.89
CHD3Q12873 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CHD3Q12873 AP004289.2-201ENST00000444413 1457 ntBASIC3.25□□□□□ -1.89
CHD3Q12873 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CHD3Q12873 MIR490-201ENST00000384865 128 ntBASIC3.25□□□□□ -1.89
CHD3Q12873 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.25□□□□□ -1.89
CHD3Q12873 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.25□□□□□ -1.89
CHD3Q12873 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.25□□□□□ -1.89
CHD3Q12873 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.25□□□□□ -1.89
CHD3Q12873 MTND6P6-201ENST00000478031 263 ntBASIC3.25□□□□□ -1.89
CHD3Q12873 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.25□□□□□ -1.89
CHD3Q12873 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CHD3Q12873 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.25□□□□□ -1.89
CHD3Q12873 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.25□□□□□ -1.89
CHD3Q12873 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.25□□□□□ -1.89
CHD3Q12873 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.25□□□□□ -1.89
CHD3Q12873 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.25□□□□□ -1.89
CHD3Q12873 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CHD3Q12873 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHD3Q12873 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.24□□□□□ -1.89
CHD3Q12873 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.24□□□□□ -1.89
CHD3Q12873 MTCO1P12-201ENST00000414273 1543 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CHD3Q12873 IFNNP1-201ENST00000429219 553 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 AC092045.1-201ENST00000495716 1231 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.24□□□□□ -1.89
CHD3Q12873 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 CYCSP30-201ENST00000546447 172 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 MIR4644-201ENST00000579929 84 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.24□□□□□ -1.89
CHD3Q12873 AC092354.2-201ENST00000607786 514 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC3.24□□□□□ -1.89
CHD3Q12873 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.24□□□□□ -1.89
CHD3Q12873 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
CHD3Q12873 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CHD3Q12873 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHD3Q12873 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHD3Q12873 RNU1-89P-201ENST00000384592 164 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CHD3Q12873 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 TCEA1P2-201ENST00000420496 906 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 AL390879.2-203ENST00000426943 1121 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.24□□□□□ -1.89
CHD3Q12873 AL645931.1-201ENST00000439737 410 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 AL356535.1-201ENST00000440335 398 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 CYCSP35-201ENST00000451978 304 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHD3Q12873 AC084198.1-201ENST00000477747 402 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 OR4C2P-201ENST00000530855 1064 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 DUX4L52-201ENST00000549363 777 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.24□□□□□ -1.89
CHD3Q12873 MIR5187-201ENST00000583479 76 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.24□□□□□ -1.89
CHD3Q12873 AC005344.1-201ENST00000613391 459 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 AC022960.2-201ENST00000616300 666 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 AC067852.7-201ENST00000623270 535 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 OR5AC4P-202ENST00000642086 985 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.24□□□□□ -1.89
CHD3Q12873 AC009229.4-201ENST00000623854 1947 ntBASIC3.24□□□□□ -1.89
CHD3Q12873 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CHD3Q12873 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CHD3Q12873 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CHD3Q12873 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.23□□□□□ -1.89
CHD3Q12873 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC3.23□□□□□ -1.89
CHD3Q12873 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.23□□□□□ -1.89
CHD3Q12873 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.23□□□□□ -1.89
CHD3Q12873 Z74696.2-201ENST00000436514 498 ntBASIC3.23□□□□□ -1.89
CHD3Q12873 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.23□□□□□ -1.89
CHD3Q12873 NIPA2P2-201ENST00000496376 1083 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms