Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.02□□□□□ -1.45
LIG3P49916 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.02□□□□□ -1.45
LIG3P49916 UBE2V2P2-201ENST00000587677 504 ntBASIC6.02□□□□□ -1.45
LIG3P49916 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG3P49916 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC6.02□□□□□ -1.45
LIG3P49916 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.02□□□□□ -1.45
LIG3P49916 MIR6793-201ENST00000612376 63 ntBASIC6.02□□□□□ -1.45
LIG3P49916 MIR6133-201ENST00000617057 108 ntBASIC6.02□□□□□ -1.45
LIG3P49916 AC129915.3-201ENST00000634128 948 ntBASIC6.02□□□□□ -1.45
LIG3P49916 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
LIG3P49916 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
LIG3P49916 AC012254.3-201ENST00000591183 2117 ntBASIC6.02□□□□□ -1.45
LIG3P49916 AC092376.2-201ENST00000622621 4116 ntBASIC6.02□□□□□ -1.45
LIG3P49916 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIG3P49916 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
LIG3P49916 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG3P49916 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG3P49916 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG3P49916 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.02□□□□□ -1.45
LIG3P49916 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.01□□□□□ -1.45
LIG3P49916 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
LIG3P49916 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 Y_RNA.160-201ENST00000363677 92 ntBASIC6.01□□□□□ -1.45
LIG3P49916 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG3P49916 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 AL354890.1-201ENST00000413730 346 ntBASIC6.01□□□□□ -1.45
LIG3P49916 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG3P49916 REREP1Y-201ENST00000422655 198 ntBASIC6.01□□□□□ -1.45
LIG3P49916 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 REREP2Y-201ENST00000439103 200 ntBASIC6.01□□□□□ -1.45
LIG3P49916 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC6.01□□□□□ -1.45
LIG3P49916 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC6.01□□□□□ -1.45
LIG3P49916 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 BX322784.1-201ENST00000455793 1077 ntBASIC6.01□□□□□ -1.45
LIG3P49916 UBDP1-202ENST00000457888 382 ntBASIC6.01□□□□□ -1.45
LIG3P49916 RPL31P50-201ENST00000471002 296 ntBASIC6.01□□□□□ -1.45
LIG3P49916 OR5M14P-201ENST00000506803 618 ntBASIC6.01□□□□□ -1.45
LIG3P49916 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG3P49916 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG3P49916 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG3P49916 HSPA8P13-201ENST00000523715 472 ntBASIC6.01□□□□□ -1.45
LIG3P49916 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG3P49916 ZNF705CP-201ENST00000530515 889 ntBASIC6.01□□□□□ -1.45
LIG3P49916 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC6.01□□□□□ -1.45
LIG3P49916 AC090424.1-201ENST00000535243 736 ntBASIC6.01□□□□□ -1.45
LIG3P49916 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC6.01□□□□□ -1.45
LIG3P49916 AC126615.2-201ENST00000553003 515 ntBASIC6.01□□□□□ -1.45
LIG3P49916 AL358913.1-201ENST00000554342 121 ntBASIC6.01□□□□□ -1.45
LIG3P49916 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC6.01□□□□□ -1.45
LIG3P49916 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.01□□□□□ -1.45
LIG3P49916 AC119403.2-201ENST00000590960 598 ntBASIC6.01□□□□□ -1.45
LIG3P49916 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 AL117336.2-201ENST00000602435 335 ntBASIC6.01□□□□□ -1.45
LIG3P49916 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.01□□□□□ -1.45
LIG3P49916 BBIP1P1-201ENST00000602999 279 ntBASIC6.01□□□□□ -1.45
LIG3P49916 HSPE1P14-201ENST00000605812 302 ntBASIC6.01□□□□□ -1.45
LIG3P49916 AP001330.5-201ENST00000607176 411 ntBASIC6.01□□□□□ -1.45
LIG3P49916 AC090948.2-201ENST00000607363 564 ntBASIC6.01□□□□□ -1.45
LIG3P49916 RNU4-89P-201ENST00000607443 133 ntBASIC6.01□□□□□ -1.45
LIG3P49916 RNU6-87P-201ENST00000607561 108 ntBASIC6.01□□□□□ -1.45
LIG3P49916 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC6.01□□□□□ -1.45
LIG3P49916 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG3P49916 AC009268.2-201ENST00000621925 457 ntBASIC6.01□□□□□ -1.45
LIG3P49916 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG3P49916 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC6.01□□□□□ -1.45
LIG3P49916 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC6.01□□□□□ -1.45
LIG3P49916 AL034546.1-201ENST00000623740 3693 ntBASIC6.01□□□□□ -1.45
LIG3P49916 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
LIG3P49916 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6□□□□□ -1.45
LIG3P49916 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC6□□□□□ -1.45
LIG3P49916 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6□□□□□ -1.45
LIG3P49916 CCT4P2-201ENST00000233836 1548 ntBASIC6□□□□□ -1.45
LIG3P49916 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6□□□□□ -1.45
LIG3P49916 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
LIG3P49916 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
LIG3P49916 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6□□□□□ -1.45
LIG3P49916 RNU6-1011P-201ENST00000384668 107 ntBASIC6□□□□□ -1.45
LIG3P49916 RPA3-203ENST00000401447 414 ntTSL 3 BASIC6□□□□□ -1.45
LIG3P49916 RPS20P2-201ENST00000402520 389 ntBASIC6□□□□□ -1.45
LIG3P49916 RNU2-8P-201ENST00000410727 190 ntBASIC6□□□□□ -1.45
LIG3P49916 GPS2P1-201ENST00000411761 986 ntBASIC6□□□□□ -1.45
LIG3P49916 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC6□□□□□ -1.45
LIG3P49916 TEX41-204ENST00000423031 491 ntTSL 4 BASIC6□□□□□ -1.45
LIG3P49916 AL589872.1-201ENST00000426602 288 ntBASIC6□□□□□ -1.45
LIG3P49916 AC133104.1-201ENST00000429100 218 ntBASIC6□□□□□ -1.45
LIG3P49916 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC6□□□□□ -1.45
LIG3P49916 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms