Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 RPL7L1P8-201ENST00000469911 741 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 OR5H3P-201ENST00000502817 919 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AP000916.1-201ENST00000533869 835 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC015911.5-201ENST00000587076 451 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC008739.3-201ENST00000603262 127 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC026741.1-201ENST00000605892 482 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 AP006248.2-201ENST00000623309 592 ntBASIC4.09□□□□□ -1.75
TNFRSF4P43489 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.75
TNFRSF4P43489 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
TNFRSF4P43489 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.09□□□□□ -1.75
TNFRSF4P43489 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
TNFRSF4P43489 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.09□□□□□ -1.76
TNFRSF4P43489 AC021242.1-201ENST00000507315 2035 ntBASIC4.09□□□□□ -1.76
TNFRSF4P43489 SAGE2P-201ENST00000420011 2126 ntBASIC4.09□□□□□ -1.76
TNFRSF4P43489 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 SCN1A-220ENST00000641603 12506 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 SNORD35B-201ENST00000363660 87 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 RNU1-87P-201ENST00000363727 170 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 RNU6-481P-201ENST00000384194 107 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 MIR449B-201ENST00000384995 97 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 HMGB3P19-201ENST00000403971 560 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 HNRNPDP2-201ENST00000406475 478 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 SNORA57.3-201ENST00000411095 141 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
TNFRSF4P43489 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 NOTCH2P1-201ENST00000443481 624 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC119744.1-201ENST00000454746 1715 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 RPL32P14-201ENST00000463196 378 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 RPS20P21-201ENST00000466859 343 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 RN7SL271P-201ENST00000487601 295 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC121161.1-201ENST00000510606 652 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC008694.2-201ENST00000517591 306 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 MIR3936-201ENST00000584304 110 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 EIF1P6-201ENST00000600054 334 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC069304.3-201ENST00000603938 1084 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC096586.1-201ENST00000610267 561 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC243756.2-201ENST00000618406 463 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 AP002371.2-201ENST00000624450 503 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 AC012442.3-202ENST00000636742 206 ntBASIC4.08□□□□□ -1.76
TNFRSF4P43489 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
TNFRSF4P43489 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC046144.1-201ENST00000478559 1853 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
TNFRSF4P43489 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC083899.2-201ENST00000423285 1376 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC104446.1-201ENST00000613728 1321 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC067945.1-201ENST00000342609 618 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.07□□□□□ -1.76
TNFRSF4P43489 RNU6-1339P-201ENST00000363574 91 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 MIR30B-201ENST00000384850 88 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 SNORA3.3-201ENST00000408712 125 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 BX664727.1-201ENST00000416024 466 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC004448.2-201ENST00000422360 586 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 OR5AW1P-201ENST00000426334 1006 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 SKP1P3-201ENST00000429280 487 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 AC023347.2-201ENST00000433994 462 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 GOT2P5-201ENST00000433995 546 ntBASIC4.07□□□□□ -1.76
TNFRSF4P43489 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 148.4 ms