Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RPL7P22-201ENST00000466005 733 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN4P29074 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
PTPN4P29074 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.14□□□□□ -1.75
PTPN4P29074 AC010342.1-201ENST00000514047 877 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC027338.1-201ENST00000514840 825 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 PTP4A1P6-201ENST00000531034 478 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC007599.1-201ENST00000568688 1174 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC079171.1-201ENST00000568788 914 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN4P29074 ZNF92P2-201ENST00000600543 1059 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC092474.3-201ENST00000603022 568 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 RPL21P136-201ENST00000605378 396 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AL109618.2-201ENST00000605527 211 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.14□□□□□ -1.75
PTPN4P29074 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN4P29074 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.14□□□□□ -1.75
PTPN4P29074 MIR492-201ENST00000638676 116 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 HSPA8P19-201ENST00000505359 1517 ntBASIC4.14□□□□□ -1.75
PTPN4P29074 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN4P29074 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN4P29074 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PTPN4P29074 AL158163.1-201ENST00000603915 1649 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN4P29074 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
PTPN4P29074 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN4P29074 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN4P29074 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
PTPN4P29074 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN4P29074 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
PTPN4P29074 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN4P29074 AL022722.2-201ENST00000402519 180 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 RN7SKP27-201ENST00000410684 333 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 RNU2-72P-201ENST00000411175 163 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 PNRC2P1-201ENST00000423940 420 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.13□□□□□ -1.75
PTPN4P29074 NPM1P34-201ENST00000428821 893 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 AL132765.1-201ENST00000434165 553 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN4P29074 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN4P29074 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN4P29074 RPL35AP15-201ENST00000468042 339 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 AP000926.1-201ENST00000479573 241 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 RPL21P103-201ENST00000479921 488 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN4P29074 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.13□□□□□ -1.75
PTPN4P29074 RN7SL812P-201ENST00000493791 279 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 BNIP3P41-201ENST00000503774 571 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 ATP1B1P1-201ENST00000509767 915 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 AC110792.2-201ENST00000510278 224 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.13□□□□□ -1.75
PTPN4P29074 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.13□□□□□ -1.75
PTPN4P29074 TRAV8-5-201ENST00000537369 341 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 AC006064.5-201ENST00000541782 248 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 AC079148.1-201ENST00000565944 819 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN4P29074 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN4P29074 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.13□□□□□ -1.75
PTPN4P29074 AC097372.4-201ENST00000625025 466 ntBASIC4.13□□□□□ -1.75
PTPN4P29074 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.13□□□□□ -1.75
PTPN4P29074 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.13□□□□□ -1.75
PTPN4P29074 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
PTPN4P29074 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
PTPN4P29074 MTCO1P18-201ENST00000455518 1419 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PTPN4P29074 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN4P29074 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN4P29074 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN4P29074 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN4P29074 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN4P29074 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PTPN4P29074 RNA5SP317-201ENST00000410176 116 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 RNA5SP311-201ENST00000411290 116 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN4P29074 AL139095.3-201ENST00000419672 1203 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.12□□□□□ -1.75
PTPN4P29074 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN4P29074 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.12□□□□□ -1.75
PTPN4P29074 RPL23AP52-201ENST00000439311 478 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN4P29074 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.12□□□□□ -1.75
PTPN4P29074 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.12□□□□□ -1.75
PTPN4P29074 AC096992.1-201ENST00000459808 709 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 RPL35P6-201ENST00000490024 372 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN4P29074 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.12□□□□□ -1.75
PTPN4P29074 BTF3L4P4-201ENST00000506381 449 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN4P29074 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PTPN4P29074 RNA5SP315-201ENST00000516340 116 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 RNA5SP312-201ENST00000517068 116 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN4P29074 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.12□□□□□ -1.75
PTPN4P29074 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.12□□□□□ -1.75
PTPN4P29074 AC092851.1-201ENST00000535964 478 ntBASIC4.12□□□□□ -1.75
PTPN4P29074 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.12□□□□□ -1.75
PTPN4P29074 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms