Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-1038P-201ENST00000516516 104 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 RN7SKP99-201ENST00000517028 307 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 IGKV3D-25-201ENST00000519599 235 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 TBCA-209ENST00000522370 435 ntTSL 3 BASIC5.81□□□□□ -1.48
COL8A1P27658 HSPE1P20-201ENST00000538133 289 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.81□□□□□ -1.48
COL8A1P27658 MRPS21P8-201ENST00000569196 235 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC130289.1-201ENST00000577321 73 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 MIR4700-201ENST00000578311 74 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 OR4K8P-201ENST00000578842 1048 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 SNORD95-201ENST00000579879 68 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC105224.1-201ENST00000587055 421 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC5.81□□□□□ -1.48
COL8A1P27658 MTND4LP5-201ENST00000605152 292 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 SNORD58B-201ENST00000607313 66 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AL391813.2-201ENST00000609113 322 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC023509.5-201ENST00000617434 807 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 MIR7854-201ENST00000620068 65 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AP001264.1-201ENST00000620602 703 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.81□□□□□ -1.48
COL8A1P27658 AL606534.2-204ENST00000635008 178 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 AC104162.1-201ENST00000430831 2382 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC130304.1-201ENST00000622942 2385 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 SMG1P5-202ENST00000529428 4219 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 SMG1P2-201ENST00000566127 4221 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 AC092821.2-201ENST00000545710 2042 ntBASIC5.81□□□□□ -1.48
COL8A1P27658 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
COL8A1P27658 AC010168.2-201ENST00000562691 5428 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 AC235565.1-201ENST00000456962 1325 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 SHQ1P1-201ENST00000437111 1544 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 AC005034.3-201ENST00000604845 1747 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 GART-204ENST00000381831 3490 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 RNA5SP443-201ENST00000363083 132 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 SNORA58B-201ENST00000364259 136 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 SNORA68-201ENST00000384437 133 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 RNA5SP284-201ENST00000384547 118 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 RNU6-952P-201ENST00000391164 108 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 CYCSP17-201ENST00000407870 315 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 AL591848.1-201ENST00000413092 322 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 ATP5LP2-201ENST00000440646 311 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 TXNP5-201ENST00000441043 315 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 NEFMP1-201ENST00000443423 1006 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 HMGB3P30-201ENST00000457863 606 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 RPS23P3-201ENST00000470993 430 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 RN7SL273P-201ENST00000481561 299 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 RPL12P30-201ENST00000488389 499 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 RNA5SP418-201ENST00000515951 117 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 RNU7-51P-201ENST00000516560 62 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 RNU4-77P-201ENST00000516692 156 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 Y_RNA.708-201ENST00000516950 96 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 IGKV2D-23-201ENST00000518179 286 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 COX6CP8-201ENST00000522620 226 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC5.8□□□□□ -1.48
COL8A1P27658 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.8□□□□□ -1.48
COL8A1P27658 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.8□□□□□ -1.48
COL8A1P27658 RPL21P7-201ENST00000557463 483 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC5.8□□□□□ -1.48
COL8A1P27658 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.8□□□□□ -1.48
COL8A1P27658 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.8□□□□□ -1.48
COL8A1P27658 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC5.8□□□□□ -1.48
COL8A1P27658 AC015818.6-201ENST00000584274 634 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC5.8□□□□□ -1.48
COL8A1P27658 AC104763.2-201ENST00000604179 382 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 AC092266.1-201ENST00000610958 165 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 AC069234.4-201ENST00000621276 412 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.8□□□□□ -1.48
COL8A1P27658 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC5.8□□□□□ -1.48
COL8A1P27658 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
COL8A1P27658 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.8□□□□□ -1.48
COL8A1P27658 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC5.8□□□□□ -1.48
COL8A1P27658 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 AKAP17BP-201ENST00000431706 2719 ntBASIC5.8□□□□□ -1.48
COL8A1P27658 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.8□□□□□ -1.48
COL8A1P27658 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 SLC9A9-201ENST00000316549 3627 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 LCP1-201ENST00000323076 3787 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
COL8A1P27658 SLC36A4-206ENST00000529184 1917 ntTSL 2 BASIC5.8□□□□□ -1.48
COL8A1P27658 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
COL8A1P27658 CA10-204ENST00000570565 2276 ntTSL 5 BASIC5.79□□□□□ -1.48
COL8A1P27658 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
COL8A1P27658 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms