Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU2-65P-201ENST00000410162 185 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AL161449.1-201ENST00000414531 1199 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC016907.1-201ENST00000419483 435 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 OR2AM1P-201ENST00000422137 422 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 DDX39BP1-205ENST00000422507 192 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 OR2AH1P-201ENST00000425717 928 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 FHP1-201ENST00000442741 703 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 TPMTP4-201ENST00000450749 678 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 BZW1P2-201ENST00000473537 826 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 NAA50-206ENST00000493454 964 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC112198.1-201ENST00000505369 1220 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC008885.2-201ENST00000509506 930 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC048346.1-201ENST00000510247 144 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC010587.2-201ENST00000511727 448 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 HIGD1AP6-201ENST00000521833 279 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 RPL23AP53-201ENST00000521854 457 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC008033.2-201ENST00000542626 177 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 UBE2NP1-201ENST00000545592 458 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 HIGD1AP17-201ENST00000554576 276 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 ISCA1P3-201ENST00000577104 373 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AL390838.2-201ENST00000602394 274 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC105129.3-201ENST00000605455 485 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC122108.2-201ENST00000611946 526 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AC122133.1-201ENST00000613964 233 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 AL359757.1-201ENST00000623176 255 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 LINC01109-201ENST00000603837 3081 ntBASIC4.78□□□□□ -1.64
VPS4AQ9UN37 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS4AQ9UN37 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 DBF4P1-201ENST00000412976 1892 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 RPL32P3-201ENST00000359025 275 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 MIR23A-201ENST00000385245 73 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AL161909.1-201ENST00000397390 712 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 LUZP4P1-201ENST00000415420 344 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 CHEK2P3-201ENST00000416118 248 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 RPL17P36-201ENST00000420302 549 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AC019178.2-201ENST00000423595 505 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 PPIAP17-201ENST00000438507 471 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AL354941.1-201ENST00000438600 464 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 MTCYBP34-201ENST00000439552 670 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 UBE2D3P4-201ENST00000441973 436 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 RNU6-1218P-201ENST00000458990 108 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AC113430.1-201ENST00000506872 718 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 HNRNPKP5-201ENST00000515300 253 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 RNU6-347P-201ENST00000516658 105 ntBASIC4.77□□□□□ -1.65
VPS4AQ9UN37 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
VPS4AQ9UN37 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms