Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS35Q96QK1 MTND5P11-201ENST00000511037 1812 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS35Q96QK1 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 RNA5SP130-201ENST00000364431 114 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 RNU1-13P-201ENST00000384499 162 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 HSPE1P12-201ENST00000412576 301 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 PGBD4P8-201ENST00000412993 562 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC004022.2-201ENST00000413824 193 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 PNRC2P1-201ENST00000423940 420 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC115285.1-201ENST00000424879 736 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AL358472.1-201ENST00000431295 329 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 ELOCP18-201ENST00000434209 337 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS35Q96QK1 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS35Q96QK1 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 HMGB1P16-201ENST00000447155 540 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 RPL5P32-201ENST00000454085 879 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 RN7SL271P-201ENST00000487601 295 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 PRELID3BP5-201ENST00000508612 460 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 SNORA76.2-201ENST00000517095 137 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC022790.1-201ENST00000522872 204 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC091515.1-201ENST00000548110 679 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC009101.1-201ENST00000568135 242 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
VPS35Q96QK1 VN1R79P-201ENST00000593540 513 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC020910.2-201ENST00000603635 610 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC112484.5-201ENST00000624189 228 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS35Q96QK1 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS35Q96QK1 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
VPS35Q96QK1 AC022031.1-201ENST00000585985 2593 ntBASIC4.05□□□□□ -1.76
VPS35Q96QK1 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 RNA5SP388-201ENST00000362584 119 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC004975.1-201ENST00000428733 208 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 RPS4XP4-201ENST00000443195 763 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 NUTF2P7-201ENST00000453086 375 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 TRBV8-2-201ENST00000475637 270 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS35Q96QK1 RPL23AP73-201ENST00000492507 471 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC002456.2-201ENST00000509356 380 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 KRT19P6-201ENST00000510983 209 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 MTCO1P35-201ENST00000515270 228 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 MIR2116-201ENST00000517221 80 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 MTND1P6-201ENST00000523621 946 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 TOMM20P2-201ENST00000540082 421 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AL161713.1-201ENST00000555538 145 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC007599.1-201ENST00000568688 1174 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC141257.3-201ENST00000572906 215 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 RPL23AP87-202ENST00000573039 466 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC012417.1-201ENST00000582307 1039 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 MIR6867-201ENST00000610636 67 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC233309.1-201ENST00000619522 751 ntBASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS35Q96QK1 AC016717.3-201ENST00000624730 554 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms