Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC42Q96M95 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC42Q96M95 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC42Q96M95 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC42Q96M95 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC42Q96M95 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC42Q96M95 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC42Q96M95 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC42Q96M95 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 RNU1-13P-201ENST00000384499 162 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 RNU6-55P-201ENST00000411092 107 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 RNU6-954P-201ENST00000411355 107 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 MTND2P15-201ENST00000418575 892 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC245054.1-201ENST00000420944 258 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC016712.1-201ENST00000431088 378 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 RPL21P89-201ENST00000444021 467 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 RPS3AP46-201ENST00000448352 682 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 SBDSP1-204ENST00000453858 737 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 RNU6-1218P-201ENST00000458990 108 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 MTND6P6-201ENST00000478031 263 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 AL139099.1-201ENST00000497398 403 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 TRAV31-201ENST00000502780 342 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC026333.2-201ENST00000542164 106 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 DUXAP6-201ENST00000553858 601 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 MIR5187-201ENST00000583479 76 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AL049634.3-201ENST00000604968 457 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC42Q96M95 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC42Q96M95 AL354798.1-201ENST00000622505 329 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 AP003400.2-201ENST00000624036 666 ntBASIC3.85□□□□□ -1.79
CCDC42Q96M95 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC42Q96M95 RNU6-304P-201ENST00000364855 107 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 HMGB3P18-201ENST00000406327 590 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AL139247.1-201ENST00000422768 325 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 RPL23AP62-201ENST00000463396 453 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 RPL23AP14-201ENST00000468281 468 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC006511.1-201ENST00000470614 315 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 CYCSP20-201ENST00000473154 315 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AP000893.1-201ENST00000474462 794 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC010627.1-201ENST00000503819 1294 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 RN7SKP122-201ENST00000515923 296 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 NPM1P52-201ENST00000518264 846 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC087499.8-201ENST00000578406 226 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 VN1R84P-201ENST00000593697 235 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AC022146.1-201ENST00000595307 847 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 PSMA6P4-201ENST00000603247 718 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AL161912.3-201ENST00000605404 628 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 AL023583.1-201ENST00000607518 1143 ntBASIC3.84□□□□□ -1.79
CCDC42Q96M95 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC42Q96M95 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 BANCR-201ENST00000624238 473 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC42Q96M95 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC42Q96M95 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC42Q96M95 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC42Q96M95 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC42Q96M95 MIR30E-201ENST00000362104 92 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 RPL7P60-201ENST00000397636 735 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 MTCO3P31-201ENST00000405526 789 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 AC073069.1-201ENST00000428657 441 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 MTCO3P21-201ENST00000430791 643 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 AL357552.1-201ENST00000445254 415 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 HSFY6P-201ENST00000445573 403 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC42Q96M95 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC42Q96M95 AC026979.1-201ENST00000492525 396 ntBASIC3.83□□□□□ -1.8
CCDC42Q96M95 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms