Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 RNA5SP477-201ENST00000362639 119 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 RNU6-1290P-201ENST00000362957 109 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 RNU6-1339P-201ENST00000363574 91 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 SNORA17A-201ENST00000391185 133 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 PPIAP9-201ENST00000403866 498 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 RNU6-954P-201ENST00000411355 107 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC092745.2-202ENST00000411880 369 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 CHEK2P5-201ENST00000423877 246 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 RPL12P16-201ENST00000431098 498 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AL133396.1-201ENST00000432048 687 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC005019.1-201ENST00000436455 431 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 YWHAZP8-201ENST00000436935 731 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC011816.1-201ENST00000441346 546 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 MTCO1P27-201ENST00000448269 226 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 RN7SL174P-201ENST00000475578 289 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 DEFB109F-201ENST00000491870 277 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC008638.1-201ENST00000506035 866 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC096754.1-201ENST00000508904 818 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC004062.1-201ENST00000509926 645 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 LIAS-206ENST00000513731 826 ntTSL 5 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 RNA5SP92-201ENST00000516437 110 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 RNU6-1261P-201ENST00000517194 104 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC022616.6-201ENST00000520479 119 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 IGLVVI-25-1-201ENST00000521893 249 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AP003072.2-201ENST00000527756 676 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC007956.1-201ENST00000555623 542 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AL049870.4-201ENST00000555741 486 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AL049839.1-201ENST00000556151 657 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC004832.4-201ENST00000608952 331 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AL450226.2-201ENST00000622913 439 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 SNORA17.5-201ENST00000630429 132 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC010149.2-201ENST00000637608 315 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 AC105074.1-201ENST00000623380 3095 ntBASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
NPAS3Q8IXF0 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AC062022.1-201ENST00000451026 1684 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 CYP2G2P-201ENST00000594920 1485 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNU6-212P-201ENST00000362642 104 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNU6-545P-201ENST00000362681 104 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNU6-216P-201ENST00000363282 104 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 Y_RNA.482-201ENST00000384377 111 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 Y_RNA.530-201ENST00000384587 101 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AL139397.2-201ENST00000404529 772 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 BTBD10P2-201ENST00000404779 676 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 NDUFS5P1-201ENST00000405668 289 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 ACTR3BP6-201ENST00000422332 1241 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AC007283.2-201ENST00000424739 197 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RPS15AP10-201ENST00000432472 382 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 GPR143P-201ENST00000434155 205 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 PPIAP19-201ENST00000486414 492 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 PSMA2P2-201ENST00000504319 686 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNU6ATAC39P-201ENST00000516309 149 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNU7-51P-201ENST00000516560 62 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 SCARNA21.2-201ENST00000516600 166 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNU6-885P-201ENST00000516607 104 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNA5SP271-201ENST00000516700 88 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNU6-1308P-201ENST00000516817 103 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 RNU6-699P-201ENST00000517081 110 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 MYL12AP1-201ENST00000518490 515 ntBASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC6.56□□□□□ -1.36
NPAS3Q8IXF0 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms