Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU6-481P-201ENST00000384194 107 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 MIR122-201ENST00000385044 85 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 RNA5SP332-201ENST00000391063 115 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.31□□□□□ -1.72
HNF4AP41235 MIR1250-201ENST00000408098 113 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 RNU6-77P-201ENST00000410554 91 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC069218.2-201ENST00000411665 344 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 RPL26P29-201ENST00000415623 438 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.31□□□□□ -1.72
HNF4AP41235 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.31□□□□□ -1.72
HNF4AP41235 RPL7P53-201ENST00000421245 739 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 RPL7AP25-201ENST00000423357 805 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.31□□□□□ -1.72
HNF4AP41235 RPEP3-201ENST00000425462 676 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC4.31□□□□□ -1.72
HNF4AP41235 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.31□□□□□ -1.72
HNF4AP41235 AC011242.1-201ENST00000433596 1158 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.31□□□□□ -1.72
HNF4AP41235 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.31□□□□□ -1.72
HNF4AP41235 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.31□□□□□ -1.72
HNF4AP41235 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.31□□□□□ -1.72
HNF4AP41235 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.31□□□□□ -1.72
HNF4AP41235 RPS29P33-201ENST00000456717 146 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 RPS27AP17-201ENST00000463344 455 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 RPS27P23-201ENST00000487608 251 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.31□□□□□ -1.72
HNF4AP41235 AC023141.12-201ENST00000512399 199 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 RNU6-202P-201ENST00000515998 96 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.31□□□□□ -1.72
HNF4AP41235 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.31□□□□□ -1.72
HNF4AP41235 AC100770.1-201ENST00000532310 322 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.31□□□□□ -1.72
HNF4AP41235 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.31□□□□□ -1.72
HNF4AP41235 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.31□□□□□ -1.72
HNF4AP41235 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.31□□□□□ -1.72
HNF4AP41235 EIF5A2P1-201ENST00000564027 460 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC006270.2-201ENST00000578523 652 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.31□□□□□ -1.72
HNF4AP41235 YWHAQP7-201ENST00000603536 658 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC007566.2-201ENST00000603642 413 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
HNF4AP41235 AC007546.2-201ENST00000623996 360 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 AC006065.6-201ENST00000625201 545 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
HNF4AP41235 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
HNF4AP41235 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HNF4AP41235 CASC19-261ENST00000641853 1638 ntBASIC4.31□□□□□ -1.72
HNF4AP41235 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.31□□□□□ -1.72
HNF4AP41235 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.31□□□□□ -1.72
HNF4AP41235 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HNF4AP41235 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HNF4AP41235 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.31□□□□□ -1.72
HNF4AP41235 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HNF4AP41235 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HNF4AP41235 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HNF4AP41235 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.3□□□□□ -1.72
HNF4AP41235 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 DHX40P1-201ENST00000588725 1412 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.3□□□□□ -1.72
HNF4AP41235 ELL2P4-201ENST00000446870 1376 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 AC090337.1-201ENST00000579651 2074 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 OR4K15-201ENST00000305051 1216 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 MIR192-201ENST00000384915 110 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.3□□□□□ -1.72
HNF4AP41235 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.3□□□□□ -1.72
HNF4AP41235 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.3□□□□□ -1.72
HNF4AP41235 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.3□□□□□ -1.72
HNF4AP41235 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.3□□□□□ -1.72
HNF4AP41235 AC011753.3-201ENST00000443436 406 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.3□□□□□ -1.72
HNF4AP41235 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.3□□□□□ -1.72
HNF4AP41235 AL929288.2-201ENST00000446368 407 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 AL513533.1-201ENST00000453728 415 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 MTND2P28-201ENST00000457540 1044 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.3□□□□□ -1.72
HNF4AP41235 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.3□□□□□ -1.72
HNF4AP41235 RN7SL738P-201ENST00000470264 297 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 AC087879.1-201ENST00000474343 374 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.3□□□□□ -1.72
HNF4AP41235 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.3□□□□□ -1.72
HNF4AP41235 RPS23P1-201ENST00000491662 432 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HNF4AP41235 OR51K1P-201ENST00000510214 950 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 MTCO3P27-201ENST00000514397 196 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 RNA5SP309-201ENST00000516670 106 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.3□□□□□ -1.72
HNF4AP41235 OR5BC1P-201ENST00000529327 739 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 AC124293.1-201ENST00000530034 493 ntBASIC4.3□□□□□ -1.72
HNF4AP41235 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.3□□□□□ -1.72
HNF4AP41235 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.3□□□□□ -1.72
HNF4AP41235 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.3□□□□□ -1.72
HNF4AP41235 RPL23AP97-201ENST00000568955 471 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms