Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.72□□□□□ -1.49
CUX1P39880 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CUX1P39880 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CUX1P39880 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.72□□□□□ -1.49
CUX1P39880 RPL23AP69-201ENST00000431134 458 ntBASIC5.72□□□□□ -1.49
CUX1P39880 AC107083.1-201ENST00000439643 279 ntBASIC5.72□□□□□ -1.49
CUX1P39880 ATP5C1P1-201ENST00000441945 895 ntBASIC5.72□□□□□ -1.49
CUX1P39880 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC5.72□□□□□ -1.49
CUX1P39880 AC025445.1-201ENST00000502728 300 ntBASIC5.72□□□□□ -1.49
CUX1P39880 AC110794.1-201ENST00000505816 425 ntBASIC5.72□□□□□ -1.49
CUX1P39880 AL121594.4-201ENST00000556211 1196 ntBASIC5.72□□□□□ -1.49
CUX1P39880 AL133457.1-201ENST00000564251 987 ntBASIC5.72□□□□□ -1.49
CUX1P39880 EIF1P6-201ENST00000600054 334 ntBASIC5.72□□□□□ -1.49
CUX1P39880 AC008638.3-201ENST00000603341 463 ntBASIC5.72□□□□□ -1.49
CUX1P39880 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC5.72□□□□□ -1.49
CUX1P39880 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CUX1P39880 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CUX1P39880 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CUX1P39880 AC068254.2-201ENST00000623938 3577 ntBASIC5.72□□□□□ -1.49
CUX1P39880 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CUX1P39880 TNPO1P3-201ENST00000436471 2662 ntBASIC5.71□□□□□ -1.49
CUX1P39880 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CUX1P39880 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CUX1P39880 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CUX1P39880 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CUX1P39880 RNU1-70P-201ENST00000362618 164 ntBASIC5.71□□□□□ -1.5
CUX1P39880 RNA5-8SP4-201ENST00000365096 150 ntBASIC5.71□□□□□ -1.5
CUX1P39880 TAF9BP1-201ENST00000396646 746 ntBASIC5.71□□□□□ -1.5
CUX1P39880 RNA5SP229-201ENST00000410809 99 ntBASIC5.71□□□□□ -1.5
CUX1P39880 YWHAQP9-201ENST00000445891 512 ntBASIC5.71□□□□□ -1.5
CUX1P39880 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC5.71□□□□□ -1.5
CUX1P39880 AC023598.1-201ENST00000472521 361 ntBASIC5.71□□□□□ -1.5
CUX1P39880 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CUX1P39880 NPM1P17-201ENST00000479221 602 ntBASIC5.71□□□□□ -1.5
CUX1P39880 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CUX1P39880 AC018442.3-201ENST00000523025 183 ntBASIC5.71□□□□□ -1.5
CUX1P39880 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC5.71□□□□□ -1.5
CUX1P39880 AP003392.5-201ENST00000607857 415 ntBASIC5.71□□□□□ -1.5
CUX1P39880 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC5.71□□□□□ -1.5
CUX1P39880 AC119674.1-212ENST00000641155 993 ntBASIC5.71□□□□□ -1.5
CUX1P39880 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CUX1P39880 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CUX1P39880 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.71□□□□□ -1.5
CUX1P39880 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CUX1P39880 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CUX1P39880 HMGN1P24-201ENST00000412282 298 ntBASIC5.7□□□□□ -1.5
CUX1P39880 MTND4P22-201ENST00000413116 1169 ntBASIC5.7□□□□□ -1.5
CUX1P39880 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CUX1P39880 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
CUX1P39880 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.7□□□□□ -1.5
CUX1P39880 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CUX1P39880 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CUX1P39880 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CUX1P39880 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC5.7□□□□□ -1.5
CUX1P39880 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CUX1P39880 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
CUX1P39880 NMD3P1-201ENST00000439704 1488 ntBASIC5.69□□□□□ -1.5
CUX1P39880 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.69□□□□□ -1.5
CUX1P39880 RNA5SP432-201ENST00000362480 116 ntBASIC5.69□□□□□ -1.5
CUX1P39880 MTND6P32-201ENST00000457611 483 ntBASIC5.69□□□□□ -1.5
CUX1P39880 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC5.69□□□□□ -1.5
CUX1P39880 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC5.69□□□□□ -1.5
CUX1P39880 AC004024.1-201ENST00000549244 247 ntBASIC5.69□□□□□ -1.5
CUX1P39880 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC5.69□□□□□ -1.5
CUX1P39880 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.69□□□□□ -1.5
CUX1P39880 AC022149.2-201ENST00000621061 203 ntBASIC5.69□□□□□ -1.5
CUX1P39880 AL596275.2-204ENST00000641628 552 ntBASIC5.69□□□□□ -1.5
CUX1P39880 AL596275.2-206ENST00000641957 626 ntBASIC5.69□□□□□ -1.5
CUX1P39880 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CUX1P39880 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CUX1P39880 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.69□□□□□ -1.5
CUX1P39880 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CUX1P39880 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CUX1P39880 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CUX1P39880 AL024507.1-201ENST00000412741 274 ntBASIC5.69□□□□□ -1.5
CUX1P39880 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC5.69□□□□□ -1.5
CUX1P39880 HMGB3P22-202ENST00000451823 572 ntBASIC5.69□□□□□ -1.5
CUX1P39880 RNU4ATAC17P-201ENST00000517272 120 ntBASIC5.69□□□□□ -1.5
CUX1P39880 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CUX1P39880 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.69□□□□□ -1.5
CUX1P39880 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC5.69□□□□□ -1.5
CUX1P39880 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC5.69□□□□□ -1.5
CUX1P39880 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC5.68□□□□□ -1.5
CUX1P39880 HSPA8P17-201ENST00000427029 1382 ntBASIC5.68□□□□□ -1.5
CUX1P39880 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC5.68□□□□□ -1.5
CUX1P39880 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.68□□□□□ -1.5
CUX1P39880 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
CUX1P39880 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUX1P39880 SCN1A-220ENST00000641603 12506 ntBASIC5.68□□□□□ -1.5
CUX1P39880 RN7SKP284-201ENST00000411002 343 ntBASIC5.68□□□□□ -1.5
CUX1P39880 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.68□□□□□ -1.5
CUX1P39880 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC5.68□□□□□ -1.5
CUX1P39880 AC034105.3-201ENST00000565294 442 ntBASIC5.68□□□□□ -1.5
CUX1P39880 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC5.68□□□□□ -1.5
CUX1P39880 AC020914.4-201ENST00000597690 277 ntBASIC5.68□□□□□ -1.5
CUX1P39880 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.68□□□□□ -1.5
CUX1P39880 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC5.68□□□□□ -1.5
CUX1P39880 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CUX1P39880 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CUX1P39880 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms