Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXA9P31269 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA9P31269 RFPL1S-203ENST00000539579 330 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA9P31269 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA9P31269 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA9P31269 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA9P31269 BNIP3P7-201ENST00000605641 516 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 AC034236.3-201ENST00000605999 461 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 RNU1-30P-201ENST00000606575 163 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 uc_338.32-201ENST00000615087 172 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 AC016957.2-201ENST00000616998 848 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 MIR4727-201ENST00000622232 55 ntBASIC4.02□□□□□ -1.77
HOXA9P31269 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA9P31269 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA9P31269 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA9P31269 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXA9P31269 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXA9P31269 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA9P31269 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA9P31269 RNA5SP72-201ENST00000364442 117 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 MIR183-201ENST00000384958 110 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA9P31269 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 MTCO3P21-201ENST00000430791 643 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA9P31269 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 HSPD1P21-201ENST00000436541 245 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 AC021205.1-201ENST00000468797 348 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 OR52A4P-203ENST00000498233 1014 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 AC026726.1-201ENST00000512859 601 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 FTH1P9-201ENST00000513251 355 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA9P31269 IGKV2-23-201ENST00000518729 323 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 IGHV3-32-201ENST00000519182 355 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 CBX3P5-201ENST00000552017 521 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.01□□□□□ -1.77
HOXA9P31269 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXA9P31269 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 VN1R84P-201ENST00000593697 235 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 AC083899.3-201ENST00000603413 594 ntBASIC4.01□□□□□ -1.77
HOXA9P31269 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA9P31269 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
HOXA9P31269 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA9P31269 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXA9P31269 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXA9P31269 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXA9P31269 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4□□□□□ -1.77
HOXA9P31269 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXA9P31269 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
HOXA9P31269 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXA9P31269 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4□□□□□ -1.77
HOXA9P31269 Y_RNA.62-201ENST00000362840 99 ntBASIC4□□□□□ -1.77
HOXA9P31269 MIR92A2-201ENST00000385299 75 ntBASIC4□□□□□ -1.77
HOXA9P31269 PTMAP5-201ENST00000393073 333 ntBASIC4□□□□□ -1.77
HOXA9P31269 RPL17P50-201ENST00000396131 546 ntBASIC4□□□□□ -1.77
HOXA9P31269 ATP5A1P2-201ENST00000412323 255 ntBASIC4□□□□□ -1.77
HOXA9P31269 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 TRIM60P17-201ENST00000415181 719 ntBASIC4□□□□□ -1.77
HOXA9P31269 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC4□□□□□ -1.77
HOXA9P31269 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 PRDX3P3-201ENST00000447765 522 ntBASIC4□□□□□ -1.77
HOXA9P31269 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 HMGB3P22-202ENST00000451823 572 ntBASIC4□□□□□ -1.77
HOXA9P31269 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4□□□□□ -1.77
HOXA9P31269 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4□□□□□ -1.77
HOXA9P31269 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 AC010683.1-201ENST00000473673 378 ntBASIC4□□□□□ -1.77
HOXA9P31269 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 AC010627.1-201ENST00000503819 1294 ntBASIC4□□□□□ -1.77
HOXA9P31269 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXA9P31269 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4□□□□□ -1.77
HOXA9P31269 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4□□□□□ -1.77
HOXA9P31269 IGLVIV-53-201ENST00000520107 367 ntBASIC4□□□□□ -1.77
HOXA9P31269 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4□□□□□ -1.77
HOXA9P31269 AC117490.2-201ENST00000610042 594 ntBASIC4□□□□□ -1.77
HOXA9P31269 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 AC233309.1-201ENST00000619522 751 ntBASIC4□□□□□ -1.77
HOXA9P31269 AL773545.4-201ENST00000637262 310 ntBASIC4□□□□□ -1.77
HOXA9P31269 U6.105-201ENST00000637379 88 ntBASIC4□□□□□ -1.77
HOXA9P31269 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4□□□□□ -1.77
HOXA9P31269 AL513478.4-201ENST00000641636 310 ntBASIC4□□□□□ -1.77
HOXA9P31269 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXA9P31269 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms