Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 Z74021.1-201ENST00000423610 407 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC104306.1-201ENST00000449702 371 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC087879.1-201ENST00000474343 374 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC048346.1-201ENST00000510247 144 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC010374.2-201ENST00000512933 535 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 IGLVIV-65-201ENST00000517313 360 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC023632.1-201ENST00000518463 375 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC009643.1-201ENST00000532030 391 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC115286.1-201ENST00000604298 434 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC012409.3-201ENST00000611343 981 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 MIR4496-201ENST00000635896 61 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS28Q9UK41 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS28Q9UK41 AC025031.4-201ENST00000621248 3271 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 AL645568.2-201ENST00000432815 1337 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS28Q9UK41 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 SAGE4P-201ENST00000442271 3381 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS28Q9UK41 MFSD8-242ENST00000641690 4199 ntBASIC4.63□□□□□ -1.67
VPS28Q9UK41 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC007390.2-201ENST00000606229 3803 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 SNORA70E-201ENST00000384492 135 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 MIR153-1-201ENST00000384914 90 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 BTBD10P2-201ENST00000404779 676 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 RPL31P45-201ENST00000419532 356 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 OR2X1P-201ENST00000421144 687 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 NF1P3-201ENST00000457709 450 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 RPL21P103-201ENST00000479921 488 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC108022.1-201ENST00000493466 478 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 CEACAMP10-202ENST00000495431 496 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 OR51K1P-201ENST00000510214 950 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC022882.1-201ENST00000532142 501 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 LRRC6P1-201ENST00000532188 885 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC044913.1-201ENST00000557200 430 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 MIR4277-201ENST00000578298 84 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 MIR4284-201ENST00000578924 81 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 LLPHP1-201ENST00000603571 367 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 AL583856.2-201ENST00000606298 543 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 AP005137.2-201ENST00000609238 400 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 AP000255.1-201ENST00000610276 676 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 LINC00901.1-201ENST00000617252 152 ntBASIC4.62□□□□□ -1.67
VPS28Q9UK41 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
VPS28Q9UK41 AL136964.1-201ENST00000622038 2990 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms