Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 TVP23CP2-201ENST00000571473 623 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC017100.2-201ENST00000584628 355 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC068790.6-201ENST00000602558 258 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 MTCYBP22-201ENST00000603788 447 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AL391358.1-201ENST00000605342 190 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AC092354.1-201ENST00000606057 376 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AP000254.1-201ENST00000609934 520 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.18□□□□□ -1.58
TDP1Q9NUW8 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.18□□□□□ -1.58
TDP1Q9NUW8 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC027228.2-201ENST00000567141 2154 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 RNU6-216P-201ENST00000363282 104 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 SNORA70.10-201ENST00000384515 134 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AGR3-202ENST00000402239 563 ntTSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 MTCO3P31-201ENST00000405526 789 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AL450338.1-201ENST00000407987 512 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 MTCO3P41-201ENST00000414801 328 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 RPL23AP39-201ENST00000415533 405 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC093414.1-201ENST00000434712 514 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC241584.1-201ENST00000438469 1241 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 MTND1P34-201ENST00000438556 671 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC011753.3-201ENST00000443436 406 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AL513533.1-201ENST00000453728 415 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 RN7SL860P-201ENST00000473738 223 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 RN7SL441P-201ENST00000492388 296 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 RPSAP51-201ENST00000497462 645 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC098976.1-201ENST00000513014 541 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC012339.2-201ENST00000523996 453 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC006362.1-201ENST00000567392 174 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AGGF1P4-201ENST00000568249 801 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 RN7SL290P-201ENST00000578661 300 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC008507.1-201ENST00000587506 734 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC020914.6-201ENST00000594327 272 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC234771.5-201ENST00000600161 514 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC020910.3-201ENST00000603701 874 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC069304.2-201ENST00000605154 435 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AL031775.1-201ENST00000607014 887 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 MIR6780A-201ENST00000615089 68 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 MIR7844-201ENST00000616161 122 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC009878.1-201ENST00000621819 340 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC092184.1-201ENST00000625042 715 ntBASIC5.17□□□□□ -1.58
TDP1Q9NUW8 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
TDP1Q9NUW8 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 207.4 ms