Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC017007.4-201ENST00000503353 1352 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 FAM35DP-201ENST00000323387 2712 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS35Q96QK1 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS35Q96QK1 RNU11-4P-201ENST00000391149 133 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 MTATP6P31-201ENST00000406985 692 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 MIR1303-201ENST00000408625 86 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 RNA5SP239-201ENST00000410218 129 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 TPT1P2-201ENST00000413105 503 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 AL356095.1-201ENST00000417217 199 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 MTND2P15-201ENST00000418575 892 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 RPS7P7-201ENST00000463499 571 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 RPL29P14-201ENST00000495837 428 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC017037.1-201ENST00000508460 471 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 OR5AK3P-201ENST00000527486 1297 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 MIR5684-201ENST00000585074 65 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC069304.3-201ENST00000603938 1084 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC114878.2-201ENST00000604863 1251 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 AL021368.1-201ENST00000607490 540 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 AP001033.2-201ENST00000609701 1003 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC103858.2-201ENST00000621471 543 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 AC091948.2-201ENST00000636510 279 ntBASIC4.07□□□□□ -1.76
VPS35Q96QK1 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.07□□□□□ -1.76
VPS35Q96QK1 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS35Q96QK1 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VPS35Q96QK1 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS35Q96QK1 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS35Q96QK1 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS35Q96QK1 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS35Q96QK1 RNU1-87P-201ENST00000363727 170 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VPS35Q96QK1 RNA5SP317-201ENST00000410176 116 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 RNA5SP311-201ENST00000411290 116 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 RNU2-6P-201ENST00000411404 190 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC023128.2-201ENST00000420880 1223 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC073508.1-201ENST00000428866 656 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 RPS27AP12-201ENST00000429552 465 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AL356276.2-201ENST00000435919 558 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 YWHAQP9-201ENST00000445891 512 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 EXTL2P1-201ENST00000446218 416 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 MTND2P30-201ENST00000456663 382 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 HPRT1P2-201ENST00000505250 544 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 IGBP1P5-201ENST00000507524 1000 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 RNA5SP315-201ENST00000516340 116 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 RNU7-143P-201ENST00000516781 65 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 RNA5SP312-201ENST00000517068 116 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC090751.1-201ENST00000566966 267 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 MIR4458-201ENST00000578872 75 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 MIR4644-201ENST00000579929 84 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 RNU4-89P-201ENST00000607443 133 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC092653.1-201ENST00000608509 531 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.06□□□□□ -1.76
VPS35Q96QK1 CDRT1-208ENST00000630868 794 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 AC083865.1-201ENST00000636634 831 ntBASIC4.06□□□□□ -1.76
VPS35Q96QK1 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VPS35Q96QK1 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.05□□□□□ -1.76
VPS35Q96QK1 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms